RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 CEP192Q8TEP8 1941 aa19.56■□□□□ 0.72
CLN3-241ENST00000635861 FAM92AA1XBS5 289 aa19.55■□□□□ 0.72
CLN3-241ENST00000635861 PALM2-AKAP2B1ALY0 433 aaPredicted RBP19.55■□□□□ 0.72
CLN3-241ENST00000635861 K7EQS6 105 aa19.55■□□□□ 0.72
CLN3-241ENST00000635861 MAPK13O15264 365 aa19.55■□□□□ 0.72
CLN3-241ENST00000635861 ABL1P00519 1130 aa19.55■□□□□ 0.72
CLN3-241ENST00000635861 MBL2P11226 248 aaPredicted RBP19.55■□□□□ 0.72
CLN3-241ENST00000635861 CMA1P23946 247 aa19.55■□□□□ 0.72
CLN3-241ENST00000635861 CASP4P49662 377 aa19.55■□□□□ 0.72
CLN3-241ENST00000635861 DNM1Q05193 864 aaKnown RBP19.55■□□□□ 0.72
CLN3-241ENST00000635861 DHCR24Q15392 516 aa19.55■□□□□ 0.72
CLN3-241ENST00000635861 GAB4Q2WGN9 574 aa19.55■□□□□ 0.72
CLN3-241ENST00000635861 UNC93AQ86WB7 457 aa19.55■□□□□ 0.72
CLN3-241ENST00000635861 RASSF3Q86WH2 238 aa19.55■□□□□ 0.72
CLN3-241ENST00000635861 TSTD1Q8NFU3 115 aa19.55■□□□□ 0.72
CLN3-241ENST00000635861 PAGE5Q96GU1 130 aa19.55■□□□□ 0.72
CLN3-241ENST00000635861 IPO9Q96P70 1041 aaKnown RBP19.55■□□□□ 0.72
CLN3-241ENST00000635861 DUSP15Q9H1R2 295 aaPredicted RBP19.55■□□□□ 0.72
CLN3-241ENST00000635861 SMYD3Q9H7B4 428 aa19.55■□□□□ 0.72
CLN3-241ENST00000635861 MMP17Q9ULZ9 603 aa19.55■□□□□ 0.72
CLN3-241ENST00000635861 CACNA1BQ00975 2339 aa19.55■□□□□ 0.72
CLN3-241ENST00000635861 A0A0A0MRY4 1105 aa19.54■□□□□ 0.72
CLN3-241ENST00000635861 CLDN5O00501 218 aa19.54■□□□□ 0.72
CLN3-241ENST00000635861 TNFRSF10BO14763 440 aa19.54■□□□□ 0.72
CLN3-241ENST00000635861 GDF9O60383 454 aa19.54■□□□□ 0.72
CLN3-241ENST00000635861 MPLP40238 635 aa19.54■□□□□ 0.72
CLN3-241ENST00000635861 ZACNQ401N2 412 aa19.54■□□□□ 0.72
CLN3-241ENST00000635861 KMT5BQ4FZB7 885 aa19.54■□□□□ 0.72
CLN3-241ENST00000635861 PREPLQ4J6C6 727 aaPredicted RBP19.54■□□□□ 0.72
CLN3-241ENST00000635861 USP39Q53GS9 565 aaKnown RBP19.54■□□□□ 0.72
CLN3-241ENST00000635861 PPM1JQ5JR12 505 aa19.54■□□□□ 0.72
CLN3-241ENST00000635861 HECTD3Q5T447 861 aa19.54■□□□□ 0.72
CLN3-241ENST00000635861 IL31Q6EBC2 164 aa19.54■□□□□ 0.72
CLN3-241ENST00000635861 CNOT6LQ96LI5 555 aaKnown RBP19.54■□□□□ 0.72
CLN3-241ENST00000635861 PNKPQ96T60 521 aa19.54■□□□□ 0.72
CLN3-241ENST00000635861 MED10Q9BTT4 135 aa19.54■□□□□ 0.72
CLN3-241ENST00000635861 CFAP97Q9P2B7 532 aa19.54■□□□□ 0.72
CLN3-241ENST00000635861 TNRC6BQ9UPQ9 1833 aaKnown RBP19.54■□□□□ 0.72
CLN3-241ENST00000635861 CHD8Q9HCK8 2581 aa19.54■□□□□ 0.72
CLN3-241ENST00000635861 PI4KAP42356 2102 aa19.54■□□□□ 0.72
CLN3-241ENST00000635861 CLSTN1O94985 981 aa19.53■□□□□ 0.72
CLN3-241ENST00000635861 NR3C1P04150 777 aa19.53■□□□□ 0.72
CLN3-241ENST00000635861 ZDHHC11BP0C7U3 371 aa19.53■□□□□ 0.72
CLN3-241ENST00000635861 DGKEP52429 567 aa19.53■□□□□ 0.72
CLN3-241ENST00000635861 SLC5A3P53794 718 aa19.53■□□□□ 0.72
CLN3-241ENST00000635861 ENPEPQ07075 957 aa19.53■□□□□ 0.72
CLN3-241ENST00000635861 IFRD2Q12894 506 aaPredicted RBP19.53■□□□□ 0.72
CLN3-241ENST00000635861 GRAMD1CQ8IYS0 662 aa19.53■□□□□ 0.72
CLN3-241ENST00000635861 CRYBG2Q8N1P7 616 aa19.53■□□□□ 0.72
CLN3-241ENST00000635861 CCDC47Q96A33 483 aaKnown RBP19.53■□□□□ 0.72
CLN3-241ENST00000635861 KCNK16Q96T55 309 aa19.53■□□□□ 0.72
CLN3-241ENST00000635861 FBXO44Q9H4M3 255 aa19.53■□□□□ 0.72
CLN3-241ENST00000635861 SMPD4Q9NXE4 827 aa19.53■□□□□ 0.72
CLN3-241ENST00000635861 FRMD4BQ9Y2L6 1034 aa19.53■□□□□ 0.72
CLN3-241ENST00000635861 KMT2BQ9UMN6 2715 aaPredicted RBP19.53■□□□□ 0.72
CLN3-241ENST00000635861 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.52■□□□□ 0.72
CLN3-241ENST00000635861 CALUO43852 315 aaPredicted RBP19.52■□□□□ 0.72
CLN3-241ENST00000635861 ALDH1A2O94788 518 aa19.52■□□□□ 0.72
CLN3-241ENST00000635861 VNN1O95497 513 aa19.52■□□□□ 0.72
CLN3-241ENST00000635861 APODP05090 189 aa19.52■□□□□ 0.72
CLN3-241ENST00000635861 ADH5P11766 374 aa19.52■□□□□ 0.72
CLN3-241ENST00000635861 PFKFB1P16118 471 aa19.52■□□□□ 0.72
CLN3-241ENST00000635861 CDH8P55286 799 aa19.52■□□□□ 0.72
CLN3-241ENST00000635861 GAD2Q05329 585 aa19.52■□□□□ 0.72
CLN3-241ENST00000635861 CRY1Q16526 586 aa19.52■□□□□ 0.72
CLN3-241ENST00000635861 NFIL3Q16649 462 aa19.52■□□□□ 0.72
CLN3-241ENST00000635861 RHBDF2Q6PJF5 856 aa19.52■□□□□ 0.72
CLN3-241ENST00000635861 PAQR9Q6ZVX9 377 aa19.52■□□□□ 0.72
CLN3-241ENST00000635861 CSNK1G1Q9HCP0 422 aa19.52■□□□□ 0.72
CLN3-241ENST00000635861 TRAF3IP3Q9Y228 551 aa19.52■□□□□ 0.72
CLN3-241ENST00000635861 HPSEQ9Y251 543 aa19.52■□□□□ 0.72
CLN3-241ENST00000635861 COCHO43405 550 aa19.51■□□□□ 0.71
CLN3-241ENST00000635861 AP1G2O75843 785 aa19.51■□□□□ 0.71
CLN3-241ENST00000635861 ASS1P00966 412 aaKnown RBP19.51■□□□□ 0.71
CLN3-241ENST00000635861 GRIA2P42262 883 aa19.51■□□□□ 0.71
CLN3-241ENST00000635861 TNFRSF4P43489 277 aa19.51■□□□□ 0.71
CLN3-241ENST00000635861 PKP1Q13835 747 aa19.51■□□□□ 0.71
CLN3-241ENST00000635861 SF3A2Q15428 464 aaKnown RBP19.51■□□□□ 0.71
CLN3-241ENST00000635861 C2orf27AQ580R0 203 aa19.51■□□□□ 0.71
CLN3-241ENST00000635861 SCARA5Q6ZMJ2 495 aa19.51■□□□□ 0.71
CLN3-241ENST00000635861 FUKQ8N0W3 1084 aa19.51■□□□□ 0.71
CLN3-241ENST00000635861 KCNV2Q8TDN2 545 aa19.51■□□□□ 0.71
CLN3-241ENST00000635861 ZFRQ96KR1 1074 aaKnown RBP19.51■□□□□ 0.71
CLN3-241ENST00000635861 DNAI2Q9GZS0 605 aa19.51■□□□□ 0.71
CLN3-241ENST00000635861 KRT82Q9NSB4 513 aa19.51■□□□□ 0.71
CLN3-241ENST00000635861 POLR3BQ9NW08 1133 aaPredicted RBP19.51■□□□□ 0.71
CLN3-241ENST00000635861 SH3BP1Q9Y3L3 701 aa19.51■□□□□ 0.71
CLN3-241ENST00000635861 KAT7O95251 611 aa19.51■□□□□ 0.71
CLN3-241ENST00000635861 SEC13P55735 322 aa19.51■□□□□ 0.71
CLN3-241ENST00000635861 DLG4P78352 724 aa19.51■□□□□ 0.71
CLN3-241ENST00000635861 KRT85P78386 507 aa19.51■□□□□ 0.71
CLN3-241ENST00000635861 PMS2CLQ68D20 193 aa19.51■□□□□ 0.71
CLN3-241ENST00000635861 NUDT18Q6ZVK8 323 aa19.51■□□□□ 0.71
CLN3-241ENST00000635861 SV2AQ7L0J3 742 aa19.51■□□□□ 0.71
CLN3-241ENST00000635861 ACOT1Q86TX2 421 aa19.51■□□□□ 0.71
CLN3-241ENST00000635861 SCAMP5Q8TAC9 235 aa19.51■□□□□ 0.71
CLN3-241ENST00000635861 SPATA32Q96LK8 384 aa19.51■□□□□ 0.71
CLN3-241ENST00000635861 IMPG2Q9BZV3 1241 aa19.51■□□□□ 0.71
CLN3-241ENST00000635861 SDCBP2Q9H190 292 aa19.51■□□□□ 0.71
CLN3-241ENST00000635861 POLMQ9NP87 494 aaPredicted RBP19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms