RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 TPM3P06753 285 aa19.08■□□□□ 0.64
CLN3-239ENST00000628023 TAF10Q12962 218 aa19.08■□□□□ 0.64
CLN3-239ENST00000628023 CNGA2Q16280 664 aa19.08■□□□□ 0.64
CLN3-239ENST00000628023 STXBP5Q5T5C0 1151 aa19.08■□□□□ 0.64
CLN3-239ENST00000628023 SMYD5Q6GMV2 418 aa19.08■□□□□ 0.64
CLN3-239ENST00000628023 LCLAT1Q6UWP7 414 aa19.08■□□□□ 0.64
CLN3-239ENST00000628023 CACNA2D4Q7Z3S7 1137 aa19.08■□□□□ 0.64
CLN3-239ENST00000628023 SCAMP5Q8TAC9 235 aa19.08■□□□□ 0.64
CLN3-239ENST00000628023 SHDQ96IW2 340 aa19.08■□□□□ 0.64
CLN3-239ENST00000628023 NAA15Q9BXJ9 866 aaKnown RBP19.08■□□□□ 0.64
CLN3-239ENST00000628023 GPR88Q9GZN0 384 aa19.08■□□□□ 0.64
CLN3-239ENST00000628023 TBC1D17Q9HA65 648 aa19.08■□□□□ 0.64
CLN3-239ENST00000628023 PNPLA8Q9NP80 782 aa19.08■□□□□ 0.64
CLN3-239ENST00000628023 ACP6Q9NPH0 428 aa19.08■□□□□ 0.64
CLN3-239ENST00000628023 SLC2A4RGQ9NR83 387 aa19.08■□□□□ 0.64
CLN3-239ENST00000628023 COMMD8Q9NX08 183 aa19.08■□□□□ 0.64
CLN3-239ENST00000628023 TRPM5Q9NZQ8 1165 aa19.08■□□□□ 0.64
CLN3-239ENST00000628023 TNFRSF10BO14763 440 aa19.07■□□□□ 0.64
CLN3-239ENST00000628023 XPO1O14980 1071 aaKnown RBP19.07■□□□□ 0.64
CLN3-239ENST00000628023 EPHB6O15197 1021 aa19.07■□□□□ 0.64
CLN3-239ENST00000628023 DDX6P26196 483 aaKnown RBP eCLIP19.07■□□□□ 0.64
CLN3-239ENST00000628023 BPIFB4P59827 614 aa19.07■□□□□ 0.64
CLN3-239ENST00000628023 PDE4CQ08493 712 aa19.07■□□□□ 0.64
CLN3-239ENST00000628023 ANGPT1Q15389 498 aa19.07■□□□□ 0.64
CLN3-239ENST00000628023 GPRIN1Q7Z2K8 1008 aa19.07■□□□□ 0.64
CLN3-239ENST00000628023 PIGZQ86VD9 579 aa19.07■□□□□ 0.64
CLN3-239ENST00000628023 FAM71AQ8IYT1 594 aa19.07■□□□□ 0.64
CLN3-239ENST00000628023 PDZD8Q8NEN9 1154 aa19.07■□□□□ 0.64
CLN3-239ENST00000628023 NKD2Q969F2 451 aaPredicted RBP19.07■□□□□ 0.64
CLN3-239ENST00000628023 ZSWIM1Q9BR11 485 aa19.07■□□□□ 0.64
CLN3-239ENST00000628023 TASP1Q9H6P5 420 aa19.07■□□□□ 0.64
CLN3-239ENST00000628023 ARHGEF3Q9NR81 526 aa19.07■□□□□ 0.64
CLN3-239ENST00000628023 IFNKQ9P0W0 207 aa19.07■□□□□ 0.64
CLN3-239ENST00000628023 ZMYM5Q9UJ78 669 aa19.07■□□□□ 0.64
CLN3-239ENST00000628023 A0A1W2PQC6 194 aa19.06■□□□□ 0.64
CLN3-239ENST00000628023 TADA3O75528 432 aa19.06■□□□□ 0.64
CLN3-239ENST00000628023 F11P03951 625 aa19.06■□□□□ 0.64
CLN3-239ENST00000628023 PPP3CCP48454 512 aa19.06■□□□□ 0.64
CLN3-239ENST00000628023 PDE6CP51160 858 aa19.06■□□□□ 0.64
CLN3-239ENST00000628023 NR1I3Q14994 352 aa19.06■□□□□ 0.64
CLN3-239ENST00000628023 TMEM150AQ86TG1 271 aa19.06■□□□□ 0.64
CLN3-239ENST00000628023 SLC47A2Q86VL8 602 aa19.06■□□□□ 0.64
CLN3-239ENST00000628023 MAB21L3Q8N8X9 362 aa19.06■□□□□ 0.64
CLN3-239ENST00000628023 ST13P5Q8NFI4 369 aaPredicted RBP19.06■□□□□ 0.64
CLN3-239ENST00000628023 ZSCAN18Q8TBC5 510 aaPredicted RBP19.06■□□□□ 0.64
CLN3-239ENST00000628023 ZNF606Q8WXB4 792 aa19.06■□□□□ 0.64
CLN3-239ENST00000628023 SECISBP2LQ93073 1101 aaKnown RBP19.06■□□□□ 0.64
CLN3-239ENST00000628023 ZSWIM3Q96MP5 696 aa19.06■□□□□ 0.64
CLN3-239ENST00000628023 ANP32EQ9BTT0 268 aa19.06■□□□□ 0.64
CLN3-239ENST00000628023 PDCL3Q9H2J4 239 aa19.06■□□□□ 0.64
CLN3-239ENST00000628023 LRRC4Q9HBW1 653 aa19.06■□□□□ 0.64
CLN3-239ENST00000628023 SIT1Q9Y3P8 196 aa19.06■□□□□ 0.64
CLN3-239ENST00000628023 PATJQ8NI35 1801 aa19.05■□□□□ 0.64
CLN3-239ENST00000628023 RIF1Q5UIP0 2472 aaKnown RBP19.05■□□□□ 0.64
CLN3-239ENST00000628023 HHLA1C9JL84 531 aa19.05■□□□□ 0.64
CLN3-239ENST00000628023 CBFA2T2O43439 604 aa19.05■□□□□ 0.64
CLN3-239ENST00000628023 GFPT2O94808 682 aa19.05■□□□□ 0.64
CLN3-239ENST00000628023 KRT9P35527 623 aa19.05■□□□□ 0.64
CLN3-239ENST00000628023 SOX5P35711 763 aa19.05■□□□□ 0.64
CLN3-239ENST00000628023 AVPR1AP37288 418 aa19.05■□□□□ 0.64
CLN3-239ENST00000628023 STAT1P42224 750 aa19.05■□□□□ 0.64
CLN3-239ENST00000628023 PLA2G4AP47712 749 aa19.05■□□□□ 0.64
CLN3-239ENST00000628023 PLCB2Q00722 1185 aa19.05■□□□□ 0.64
CLN3-239ENST00000628023 FAM78AQ5JUQ0 283 aa19.05■□□□□ 0.64
CLN3-239ENST00000628023 TXNDC8Q6A555 127 aa19.05■□□□□ 0.64
CLN3-239ENST00000628023 OVCA2Q8WZ82 227 aa19.05■□□□□ 0.64
CLN3-239ENST00000628023 SMARCD2Q92925 531 aa19.05■□□□□ 0.64
CLN3-239ENST00000628023 ASB16Q96NS5 453 aa19.05■□□□□ 0.64
CLN3-239ENST00000628023 KXD1Q9BQD3 176 aa19.05■□□□□ 0.64
CLN3-239ENST00000628023 UBXN6Q9BZV1 441 aa19.05■□□□□ 0.64
CLN3-239ENST00000628023 GMIPQ9P107 970 aa19.05■□□□□ 0.64
CLN3-239ENST00000628023 GREB1Q4ZG55 1949 aa19.05■□□□□ 0.64
CLN3-239ENST00000628023 TRAV19A0A0A6YYK7 116 aa19.04■□□□□ 0.64
CLN3-239ENST00000628023 PRR23AA6NEV1 266 aa19.04■□□□□ 0.64
CLN3-239ENST00000628023 TULP2O00295 520 aa19.04■□□□□ 0.64
CLN3-239ENST00000628023 CLCN1P35523 988 aa19.04■□□□□ 0.64
CLN3-239ENST00000628023 RGS7P49802 495 aa19.04■□□□□ 0.64
CLN3-239ENST00000628023 TKTL1P51854 596 aa19.04■□□□□ 0.64
CLN3-239ENST00000628023 KIF11P52732 1056 aa19.04■□□□□ 0.64
CLN3-239ENST00000628023 PFKPQ01813 784 aa19.04■□□□□ 0.64
CLN3-239ENST00000628023 DENND1BQ6P3S1 775 aa19.04■□□□□ 0.64
CLN3-239ENST00000628023 PARM1Q6UWI2 310 aa19.04■□□□□ 0.64
CLN3-239ENST00000628023 ASCL5Q7RTU5 278 aa19.04■□□□□ 0.64
CLN3-239ENST00000628023 GPIHBP1Q8IV16 184 aa19.04■□□□□ 0.64
CLN3-239ENST00000628023 SIX6OS1Q8N1H7 587 aa19.04■□□□□ 0.64
CLN3-239ENST00000628023 FGF14Q92915 247 aa19.04■□□□□ 0.64
CLN3-239ENST00000628023 ZFP14Q9HCL3 533 aa19.04■□□□□ 0.64
CLN3-239ENST00000628023 TLR8Q9NR97 1041 aaKnown RBP19.04■□□□□ 0.64
CLN3-239ENST00000628023 ST7Q9NRC1 585 aa19.04■□□□□ 0.64
CLN3-239ENST00000628023 CEP83Q9Y592 693 aa19.04■□□□□ 0.64
CLN3-239ENST00000628023 MYO16Q9Y6X6 1858 aa19.03■□□□□ 0.64
CLN3-239ENST00000628023 USP34Q70CQ2 3546 aa19.03■□□□□ 0.64
CLN3-239ENST00000628023 ZNF840PA6NDX5 716 aa19.03■□□□□ 0.64
CLN3-239ENST00000628023 DPYSL4O14531 572 aa19.03■□□□□ 0.64
CLN3-239ENST00000628023 CKMP06732 381 aa19.03■□□□□ 0.64
CLN3-239ENST00000628023 LCP1P13796 627 aa19.03■□□□□ 0.64
CLN3-239ENST00000628023 CYP11B1P15538 503 aa19.03■□□□□ 0.64
CLN3-239ENST00000628023 JAM2P57087 298 aa19.03■□□□□ 0.64
CLN3-239ENST00000628023 GPC5P78333 572 aa19.03■□□□□ 0.64
CLN3-239ENST00000628023 ADIGQ0VDE8 80 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms