RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 GNGT1P63211 74 aa23.07■■□□□ 1.28
PNKP-220ENST00000627232 CAP1Q01518 475 aa23.07■■□□□ 1.28
PNKP-220ENST00000627232 DPYSL3Q14195 570 aa23.07■■□□□ 1.28
PNKP-220ENST00000627232 MORF4L2Q15014 288 aa23.07■■□□□ 1.28
PNKP-220ENST00000627232 CDO1Q16878 200 aa23.07■■□□□ 1.28
PNKP-220ENST00000627232 DNAJC21Q5F1R6 531 aaKnown RBP23.07■■□□□ 1.28
PNKP-220ENST00000627232 EFHC1Q5JVL4 640 aa23.07■■□□□ 1.28
PNKP-220ENST00000627232 MAP3K21Q5TCX8 1036 aa23.07■■□□□ 1.28
PNKP-220ENST00000627232 WSCD1Q658N2 575 aa23.07■■□□□ 1.28
PNKP-220ENST00000627232 CENPIQ92674 756 aaPredicted RBP23.07■■□□□ 1.28
PNKP-220ENST00000627232 B3GNT5Q9BYG0 378 aa23.07■■□□□ 1.28
PNKP-220ENST00000627232 NGRNQ9NPE2 291 aaKnown RBP23.07■■□□□ 1.28
PNKP-220ENST00000627232 BCCIPQ9P287 314 aaKnown RBP eCLIP23.07■■□□□ 1.28
PNKP-220ENST00000627232 SRRDQ9UH36 339 aa23.07■■□□□ 1.28
PNKP-220ENST00000627232 PADI3Q9ULW8 664 aa23.07■■□□□ 1.28
PNKP-220ENST00000627232 NOVA2Q9UNW9 492 aaKnown RBP23.07■■□□□ 1.28
PNKP-220ENST00000627232 ATP11AP98196 1134 aa23.06■■□□□ 1.28
PNKP-220ENST00000627232 GPS1Q13098 491 aa23.06■■□□□ 1.28
PNKP-220ENST00000627232 LRRC31Q6UY01 552 aa23.06■■□□□ 1.28
PNKP-220ENST00000627232 PCGF5Q86SE9 256 aa23.06■■□□□ 1.28
PNKP-220ENST00000627232 FUKQ8N0W3 1084 aa23.06■■□□□ 1.28
PNKP-220ENST00000627232 GLIS1Q8NBF1 620 aa23.06■■□□□ 1.28
PNKP-220ENST00000627232 KCTD13Q8WZ19 329 aa23.06■■□□□ 1.28
PNKP-220ENST00000627232 TMEM121Q9BTD3 319 aa23.06■■□□□ 1.28
PNKP-220ENST00000627232 DDX23Q9BUQ8 820 aaKnown RBP23.06■■□□□ 1.28
PNKP-220ENST00000627232 MIOSQ9NXC5 875 aa23.06■■□□□ 1.28
PNKP-220ENST00000627232 EIF3HO15372 352 aaKnown RBP eCLIP23.05■■□□□ 1.28
PNKP-220ENST00000627232 AOC2O75106 756 aa23.05■■□□□ 1.28
PNKP-220ENST00000627232 CAND2O75155 1236 aa23.05■■□□□ 1.28
PNKP-220ENST00000627232 SKIP12755 728 aa23.05■■□□□ 1.28
PNKP-220ENST00000627232 LCP1P13796 627 aa23.05■■□□□ 1.28
PNKP-220ENST00000627232 PAX3P23760 479 aa23.05■■□□□ 1.28
PNKP-220ENST00000627232 TKTP29401 623 aaKnown RBP23.05■■□□□ 1.28
PNKP-220ENST00000627232 CD52P31358 61 aa23.05■■□□□ 1.28
PNKP-220ENST00000627232 ATP1A2P50993 1020 aa23.05■■□□□ 1.28
PNKP-220ENST00000627232 ITGA7Q13683 1181 aa23.05■■□□□ 1.28
PNKP-220ENST00000627232 KRT81Q14533 505 aa23.05■■□□□ 1.28
PNKP-220ENST00000627232 TRIM71Q2Q1W2 868 aaKnown RBP23.05■■□□□ 1.28
PNKP-220ENST00000627232 RAB6CQ53S08 254 aa23.05■■□□□ 1.28
PNKP-220ENST00000627232 RNF180Q86T96 592 aa23.05■■□□□ 1.28
PNKP-220ENST00000627232 SPATA18Q8TC71 538 aa23.05■■□□□ 1.28
PNKP-220ENST00000627232 LPPQ93052 612 aa23.05■■□□□ 1.28
PNKP-220ENST00000627232 RNF157Q96PX1 679 aa23.05■■□□□ 1.28
PNKP-220ENST00000627232 RAB6CQ9H0N0 254 aa23.05■■□□□ 1.28
PNKP-220ENST00000627232 STMN4Q9H169 189 aaPredicted RBP23.05■■□□□ 1.28
PNKP-220ENST00000627232 DDX20Q9UHI6 824 aaKnown RBP23.05■■□□□ 1.28
PNKP-220ENST00000627232 SHOC2Q9UQ13 582 aa23.05■■□□□ 1.28
PNKP-220ENST00000627232 TDRD15B5MCY1 1934 aaKnown RBP23.05■■□□□ 1.28
PNKP-220ENST00000627232 SRRM3A6NNA2 597 aaPredicted RBP23.04■■□□□ 1.28
PNKP-220ENST00000627232 MCF2LO15068 1137 aa23.04■■□□□ 1.28
PNKP-220ENST00000627232 AGTP01019 485 aa23.04■■□□□ 1.28
PNKP-220ENST00000627232 IVLP07476 585 aa23.04■■□□□ 1.28
PNKP-220ENST00000627232 NPR3P17342 541 aa23.04■■□□□ 1.28
PNKP-220ENST00000627232 RDXP35241 583 aaKnown RBP23.04■■□□□ 1.28
PNKP-220ENST00000627232 MDH1P40925 334 aaKnown RBP23.04■■□□□ 1.28
PNKP-220ENST00000627232 EIF3EP60228 445 aaKnown RBP23.04■■□□□ 1.28
PNKP-220ENST00000627232 PPP2R2AP63151 447 aa23.04■■□□□ 1.28
PNKP-220ENST00000627232 LPIN1Q14693 890 aa23.04■■□□□ 1.28
PNKP-220ENST00000627232 NOMO1Q15155 1222 aa23.04■■□□□ 1.28
PNKP-220ENST00000627232 ZSCAN26Q16670 478 aa23.04■■□□□ 1.28
PNKP-220ENST00000627232 MFSD5Q6N075 450 aa23.04■■□□□ 1.28
PNKP-220ENST00000627232 SCYL2Q6P3W7 929 aa23.04■■□□□ 1.28
PNKP-220ENST00000627232 PRUNE1Q86TP1 453 aa23.04■■□□□ 1.28
PNKP-220ENST00000627232 PGBD4Q96DM1 585 aa23.04■■□□□ 1.28
PNKP-220ENST00000627232 LRRC4CQ9HCJ2 640 aa23.04■■□□□ 1.28
PNKP-220ENST00000627232 NINJ2Q9NZG7 142 aa23.04■■□□□ 1.28
PNKP-220ENST00000627232 A0A0U1RQF3 1178 aa23.03■■□□□ 1.28
PNKP-220ENST00000627232 RASGRF2O14827 1237 aa23.03■■□□□ 1.28
PNKP-220ENST00000627232 ZSCAN5DPP0CG00 497 aa23.03■■□□□ 1.28
PNKP-220ENST00000627232 GHRP10912 638 aa23.03■■□□□ 1.28
PNKP-220ENST00000627232 ETS1P14921 441 aa23.03■■□□□ 1.28
PNKP-220ENST00000627232 SCNN1GP51170 649 aa23.03■■□□□ 1.28
PNKP-220ENST00000627232 HDAC4P56524 1084 aa23.03■■□□□ 1.28
PNKP-220ENST00000627232 MAGOHP61326 146 aaKnown RBP23.03■■□□□ 1.28
PNKP-220ENST00000627232 MMRN1Q13201 1228 aa23.03■■□□□ 1.28
PNKP-220ENST00000627232 UBAP2Q5T6F2 1119 aaKnown RBP23.03■■□□□ 1.28
PNKP-220ENST00000627232 RNASEH2BQ5TBB1 312 aaKnown RBP23.03■■□□□ 1.28
PNKP-220ENST00000627232 STRADAQ7RTN6 431 aa23.03■■□□□ 1.28
PNKP-220ENST00000627232 PIGZQ86VD9 579 aa23.03■■□□□ 1.28
PNKP-220ENST00000627232 CLEC4CQ8WTT0 213 aa23.03■■□□□ 1.28
PNKP-220ENST00000627232 RSAD2Q8WXG1 361 aa23.03■■□□□ 1.28
PNKP-220ENST00000627232 CAPNS2Q96L46 248 aa23.03■■□□□ 1.28
PNKP-220ENST00000627232 SNRNP25Q9BV90 132 aaKnown RBP23.03■■□□□ 1.28
PNKP-220ENST00000627232 PCDH18Q9HCL0 1135 aa23.03■■□□□ 1.28
PNKP-220ENST00000627232 UBN1Q9NPG3 1134 aa23.03■■□□□ 1.28
PNKP-220ENST00000627232 DDX43Q9NXZ2 648 aaKnown RBP23.03■■□□□ 1.28
PNKP-220ENST00000627232 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP23.03■■□□□ 1.28
PNKP-220ENST00000627232 SAE1Q9UBE0 346 aaPredicted RBP23.03■■□□□ 1.28
PNKP-220ENST00000627232 SMAPO00193 183 aa23.03■■□□□ 1.28
PNKP-220ENST00000627232 RGS16O15492 202 aaPredicted RBP23.03■■□□□ 1.28
PNKP-220ENST00000627232 MGEA5O60502 916 aa23.03■■□□□ 1.28
PNKP-220ENST00000627232 ATP2C2O75185 946 aa23.03■■□□□ 1.28
PNKP-220ENST00000627232 TCEA3O75764 348 aa23.03■■□□□ 1.28
PNKP-220ENST00000627232 MYCNP04198 464 aaPredicted RBP23.03■■□□□ 1.28
PNKP-220ENST00000627232 PECAM1P16284 738 aaPredicted RBP23.03■■□□□ 1.28
PNKP-220ENST00000627232 TGM2P21980 687 aa23.03■■□□□ 1.28
PNKP-220ENST00000627232 HPDP32754 393 aaPredicted RBP23.03■■□□□ 1.28
PNKP-220ENST00000627232 CLCNKBP51801 687 aa23.03■■□□□ 1.28
PNKP-220ENST00000627232 TNFAIP8L3Q5GJ75 292 aa23.03■■□□□ 1.28
PNKP-220ENST00000627232 ERMARDQ5T6L9 678 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms