RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 RAD23BP54727 409 aa9.27□□□□□ -0.92
PDLIM5-222ENST00000615540 SP2Q02086 613 aa9.27□□□□□ -0.92
PDLIM5-222ENST00000615540 PKN2Q16513 984 aaKnown RBP9.27□□□□□ -0.92
PDLIM5-222ENST00000615540 TMCO4Q5TGY1 634 aa9.27□□□□□ -0.92
PDLIM5-222ENST00000615540 MAGEB18Q96M61 343 aa9.27□□□□□ -0.92
PDLIM5-222ENST00000615540 GPR20Q99678 358 aa9.27□□□□□ -0.92
PDLIM5-222ENST00000615540 TUBB6Q9BUF5 446 aa9.27□□□□□ -0.92
PDLIM5-222ENST00000615540 CPSF2Q9P2I0 782 aaKnown RBP9.27□□□□□ -0.92
PDLIM5-222ENST00000615540 TELO2Q9Y4R8 837 aa9.27□□□□□ -0.92
PDLIM5-222ENST00000615540 PCDHB7Q9Y5E2 793 aa9.27□□□□□ -0.92
PDLIM5-222ENST00000615540 MYH1P12882 1939 aa9.27□□□□□ -0.92
PDLIM5-222ENST00000615540 COL16A1Q07092 1604 aaPredicted RBP9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 GRIN3BO60391 1043 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 CST3P01034 146 aaPredicted RBP9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 CHRNB2P17787 502 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 EPHB2P29323 1055 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 BCAT1P54687 386 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 ZNF235Q14590 738 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 USP10Q14694 798 aaKnown RBP9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 MORF4L2Q15014 288 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 NFIL3Q16649 462 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 ZC3H12AQ5D1E8 599 aaKnown RBP9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 PPWD1Q96BP3 646 aaKnown RBP9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 FAM136AQ96C01 138 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 TJP2Q9UDY2 1190 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 ZBBXA8MT70 800 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 TTC4O95801 387 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 ADSSP30520 456 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 HOXD13P35453 343 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 PNPLA4P41247 253 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 MMP14P50281 582 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 PRAMEP78395 509 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 PDK1Q15118 436 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 C10orf120Q5SQS8 335 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 ZPBP2Q6X784 338 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 ZNF669Q96BR6 464 aaPredicted RBP9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 WDR70Q9NW82 654 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 HAO1Q9UJM8 370 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 SOWAHBA6NEL2 793 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 CLDN5O00501 218 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 DNALI1O14645 258 aaPredicted RBP9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 B3GAT3O94766 335 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 TPH1P17752 444 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 RFC1P35251 1148 aaPredicted RBP9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 MLH1P40692 756 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 PSEN2P49810 448 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 SLC26A2P50443 739 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 ANKRD20A8PQ5CZ79 823 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 SLC27A1Q6PCB7 646 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 HELQQ8TDG4 1101 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 PTPRN2Q92932 1015 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 STAMBPL1Q96FJ0 436 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 LPIN3Q9BQK8 851 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 ZBED2Q9BTP6 218 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 RNPEPQ9H4A4 650 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 IARS2Q9NSE4 1012 aaKnown RBP9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 C3orf70A6NLC5 250 aaPredicted RBP9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 USP17L7P0C7H9 530 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 OCRLQ01968 901 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 STX3Q13277 289 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 ACCSLQ4AC99 568 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 USP50Q70EL3 339 aaPredicted RBP9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 KATNAL2Q8IYT4 538 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 SHC3Q92529 594 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 NDRG1Q92597 394 aaKnown RBP9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 CCDC124Q96CT7 223 aaKnown RBP9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 TUBGCP4Q9UGJ1 667 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 SLC39A10Q9ULF5 831 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 ZNF536O15090 1300 aa9.27□□□□□ -0.93
PDLIM5-222ENST00000615540 NOL3O60936 208 aaKnown RBP9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 RECQL4O94761 1208 aa9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 ELK3P41970 407 aa9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 SCTRP47872 440 aa9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 KPNA2P52292 529 aaKnown RBP9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 NOMO3P69849 1222 aa9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 CRADDP78560 199 aa9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 FSTL1Q12841 308 aa9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 DBN1Q16643 649 aa9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 ACAD11Q709F0 780 aa9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 PRPF39Q86UA1 669 aaKnown RBP9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 DDIASQ8IXT1 998 aa9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 NDUFAF2Q8N183 169 aa9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 GBP7Q8N8V2 638 aaPredicted RBP9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 CNPY3Q9BT09 278 aa9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 NOP53Q9NZM5 478 aaKnown RBP9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 NFKBIEO00221 500 aa9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 PMPCBO75439 489 aa9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 C4BPAP04003 597 aaKnown RBP9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 KDELR1P24390 212 aa9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 HADHAP40939 763 aa9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 COLGALT1Q8NBJ5 622 aa9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.26□□□□□ -0.931e-6■■■□□ 17.2
PDLIM5-222ENST00000615540 C18orf25Q96B23 403 aaPredicted RBP9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 NUF2Q9BZD4 464 aa9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 VTA1Q9NP79 307 aa9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 NUDT5Q9UKK9 219 aa9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 ANGPTL2Q9UKU9 493 aa9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 A0A1B0GUL6 1792 aa9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 LIASO43766 372 aa9.26□□□□□ -0.93
PDLIM5-222ENST00000615540 SNX2O60749 519 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms