RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 CES1P23141 567 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 FDFT1P37268 417 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 RPL21P46778 160 aaKnown RBP10.63□□□□□ -0.71
VPS39-214ENST00000614932 KRT6CP48668 564 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 HIRAP54198 1017 aaPredicted RBP10.63□□□□□ -0.71
VPS39-214ENST00000614932 IRX4P78413 519 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 COASYQ13057 564 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 MAPK7Q13164 816 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 SPARCL1Q14515 664 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 PSMD6Q15008 389 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 PDK4Q16654 411 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 MAPK6Q16659 721 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 CYP2A13Q16696 494 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 ITPRIPL1Q6GPH6 555 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 TMPRSS6Q8IU80 811 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 RAB3IL1Q8TBN0 382 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 BRSK1Q8TDC3 778 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 HPS1Q92902 700 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 FBXL18Q96ME1 805 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.63□□□□□ -0.71
VPS39-214ENST00000614932 SHCBP1LQ9BZQ2 653 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 IMPG2Q9BZV3 1241 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 RNF38Q9H0F5 515 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 IKZF4Q9H2S9 585 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 NPHS2Q9NP85 383 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 HEY2Q9UBP5 337 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 PRR12Q9ULL5 1215 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 A0A087X0T9 212 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 LINC00854A0A1B0GVQ3 168 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 TRAF5O00463 557 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 IDH3BO43837 385 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 B3GALNT1O75752 331 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 TM7SF2O76062 418 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 FAM228BP0C875 321 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 PEX2P28328 305 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 SNAPC2Q13487 334 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 OTOAQ7RTW8 1153 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 DCAF4Q8WV16 495 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 DPF3Q92784 378 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 MTBPQ96DY7 904 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 HES6Q96HZ4 224 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 KLHL25Q9H0H3 589 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 C17orf75Q9HAS0 396 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 FOCADQ5VW36 1801 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 ZSCAN5BA6NJL1 495 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 TSPAN9O75954 239 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 ACSL3O95573 720 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 CLK3P49761 638 aaKnown RBP10.62□□□□□ -0.71
VPS39-214ENST00000614932 IST1P53990 364 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 MYBPC1Q00872 1141 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 TNIP1Q15025 636 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 ZNF568Q3ZCX4 644 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 CCDC58Q4VC31 144 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 TJAP1Q5JTD0 557 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 PAOXQ6QHF9 649 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 ISLR2Q6UXK2 745 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 CYP4V2Q6ZWL3 525 aaPredicted RBP10.62□□□□□ -0.71
VPS39-214ENST00000614932 CCDC25Q86WR0 208 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 HEATR4Q86WZ0 1026 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 TTLL6Q8N841 843 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 HELQQ8TDG4 1101 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 TAMM41Q96BW9 452 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 PSKH2Q96QS6 385 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 HAUS8Q9BT25 410 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 C12orf10Q9HB07 376 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 SACM1LQ9NTJ5 587 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 ZNF70Q9UC06 446 aaPredicted RBP10.62□□□□□ -0.71
VPS39-214ENST00000614932 STK39Q9UEW8 545 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 LGALS13Q9UHV8 139 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 FZD1Q9UP38 647 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 SPDYE2BA6NHP3 402 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 DDX39AO00148 427 aaKnown RBP10.62□□□□□ -0.71
VPS39-214ENST00000614932 RGS13O14921 159 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 TLR2O60603 784 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 ZBTB7AO95365 584 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 EGFRP00533 1210 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 SPDYE6P0CI01 402 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 SLC1A1P43005 524 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 TSPY1Q01534 308 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 EPHA7Q15375 998 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 TMEM119Q4V9L6 283 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 C10orf76Q5T2E6 689 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 SLC51BQ86UW2 128 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 CATSPER3Q86XQ3 398 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 ULK2Q8IYT8 1036 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 DNAJC19Q96DA6 116 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 FAR2Q96K12 515 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 GCNAQ96QF7 691 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 RANBP9Q96S59 729 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 CDC42EP4Q9H3Q1 356 aaKnown RBP10.62□□□□□ -0.71
VPS39-214ENST00000614932 SLC7A8Q9UHI5 535 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 APPL1Q9UKG1 709 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 ADAMTS6Q9UKP5 1117 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 B2RBV5 119 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 PODXLO00592 558 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 ATMINO43313 823 aaPredicted RBP10.62□□□□□ -0.71
VPS39-214ENST00000614932 CIITAP33076 1130 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 CASP5P51878 434 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 IFITM2Q01629 132 aa10.62□□□□□ -0.71
VPS39-214ENST00000614932 CREB5Q02930 508 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms