RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 ECI2O75521 394 aa17.43■□□□□ 0.38
CCDC28A-202ENST00000611852 CYP11B1P15538 503 aa17.43■□□□□ 0.38
CCDC28A-202ENST00000611852 SOX5P35711 763 aa17.43■□□□□ 0.38
CCDC28A-202ENST00000611852 PBX1P40424 430 aa17.43■□□□□ 0.38
CCDC28A-202ENST00000611852 VIPR2P41587 438 aa17.43■□□□□ 0.38
CCDC28A-202ENST00000611852 PGFP49763 221 aa17.43■□□□□ 0.38
CCDC28A-202ENST00000611852 TKTL1P51854 596 aa17.43■□□□□ 0.38
CCDC28A-202ENST00000611852 PMF1Q6P1K2 205 aa17.43■□□□□ 0.38
CCDC28A-202ENST00000611852 CCDC186Q7Z3E2 898 aa17.43■□□□□ 0.38
CCDC28A-202ENST00000611852 SLC44A3Q8N4M1 653 aa17.43■□□□□ 0.38
CCDC28A-202ENST00000611852 ELSPBP1Q96BH3 223 aa17.43■□□□□ 0.38
CCDC28A-202ENST00000611852 SLC22A12Q96S37 553 aa17.43■□□□□ 0.38
CCDC28A-202ENST00000611852 CYP2S1Q96SQ9 504 aa17.43■□□□□ 0.38
CCDC28A-202ENST00000611852 KXD1Q9BQD3 176 aa17.43■□□□□ 0.38
CCDC28A-202ENST00000611852 TRPC7Q9HCX4 862 aa17.43■□□□□ 0.38
CCDC28A-202ENST00000611852 PCDHGC3Q9UN70 934 aa17.43■□□□□ 0.38
CCDC28A-202ENST00000611852 NUP210Q8TEM1 1887 aaPredicted RBP17.43■□□□□ 0.38
CCDC28A-202ENST00000611852 MYO16Q9Y6X6 1858 aa17.43■□□□□ 0.38
CCDC28A-202ENST00000611852 CUL9Q8IWT3 2517 aa17.43■□□□□ 0.38
CCDC28A-202ENST00000611852 GABBR2O75899 941 aa17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 GFPT2O94808 682 aa17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 PRAMEF12O95522 483 aa17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 ABL1P00519 1130 aa17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 OAS1P00973 400 aaKnown RBP17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 AVPR1AP37288 418 aa17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 STAT1P42224 750 aa17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 RGS7P49802 495 aa17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 TDGQ13569 410 aa17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 GPIHBP1Q8IV16 184 aa17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 RSPRY1Q96DX4 576 aa17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 PLA2G2FQ9BZM2 168 aa17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 XPO4Q9C0E2 1151 aaKnown RBP17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 SMG9Q9H0W8 520 aaKnown RBP17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 LRRC4Q9HBW1 653 aa17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 TLR8Q9NR97 1041 aaKnown RBP17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 TRAV19A0A0A6YYK7 116 aa17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 USP17L7P0C7H9 530 aa17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 PFKLP17858 780 aa17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 HDCP19113 662 aa17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 PDE6CP51160 858 aa17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 ADIGQ0VDE8 80 aa17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 PM20D1Q6GTS8 502 aa17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 CACNA2D4Q7Z3S7 1137 aa17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 NOP9Q86U38 636 aaKnown RBP17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 ARL14EPQ8N8R7 260 aaPredicted RBP17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 EPS8L1Q8TE68 723 aa17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 STK32AQ8WU08 396 aa17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 DDX1Q92499 740 aaKnown RBP17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 USP13Q92995 863 aaPredicted RBP17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 HSFY1Q96LI6 401 aa17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 LHX5Q9H2C1 402 aa17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 SMOC2Q9H3U7 446 aa17.42■□□□□ 0.38
CCDC28A-202ENST00000611852 DCXO43602 365 aa17.41■□□□□ 0.38
CCDC28A-202ENST00000611852 OLFM2O95897 454 aa17.41■□□□□ 0.38
CCDC28A-202ENST00000611852 ZBED1O96006 694 aa17.41■□□□□ 0.38
CCDC28A-202ENST00000611852 CKMP06732 381 aa17.41■□□□□ 0.38
CCDC28A-202ENST00000611852 KRT9P35527 623 aa17.41■□□□□ 0.38
CCDC28A-202ENST00000611852 RPL34P49207 117 aaKnown RBP17.41■□□□□ 0.38
CCDC28A-202ENST00000611852 TUBP50607 506 aa17.41■□□□□ 0.38
CCDC28A-202ENST00000611852 VITQ6UXI7 678 aa17.41■□□□□ 0.38
CCDC28A-202ENST00000611852 SCD5Q86SK9 330 aa17.41■□□□□ 0.38
CCDC28A-202ENST00000611852 GAS2L3Q86XJ1 694 aa17.41■□□□□ 0.38
CCDC28A-202ENST00000611852 SIX6OS1Q8N1H7 587 aa17.41■□□□□ 0.38
CCDC28A-202ENST00000611852 WDTC1Q8N5D0 677 aa17.41■□□□□ 0.38
CCDC28A-202ENST00000611852 BAP1Q92560 729 aa17.41■□□□□ 0.38
CCDC28A-202ENST00000611852 E2F7Q96AV8 911 aa17.41■□□□□ 0.38
CCDC28A-202ENST00000611852 ULBP1Q9BZM6 244 aa17.41■□□□□ 0.38
CCDC28A-202ENST00000611852 TTYH3Q9C0H2 523 aa17.41■□□□□ 0.38
CCDC28A-202ENST00000611852 RNF38Q9H0F5 515 aa17.41■□□□□ 0.38
CCDC28A-202ENST00000611852 RBSNQ9H1K0 784 aa17.41■□□□□ 0.38
CCDC28A-202ENST00000611852 CCSER2Q9H7U1 834 aa17.41■□□□□ 0.38
CCDC28A-202ENST00000611852 NMUR1Q9HB89 426 aa17.41■□□□□ 0.38
CCDC28A-202ENST00000611852 TDP1Q9NUW8 608 aa17.41■□□□□ 0.38
CCDC28A-202ENST00000611852 OSER1Q9NX31 292 aa17.41■□□□□ 0.38
CCDC28A-202ENST00000611852 OBP2AQ9NY56 170 aa17.41■□□□□ 0.38
CCDC28A-202ENST00000611852 CYTH4Q9UIA0 394 aa17.41■□□□□ 0.38
CCDC28A-202ENST00000611852 CCL26Q9Y258 94 aa17.41■□□□□ 0.38
CCDC28A-202ENST00000611852 A0A1W2PQH9 124 aa17.4■□□□□ 0.38
CCDC28A-202ENST00000611852 HEPACAM2A8MVW5 462 aa17.4■□□□□ 0.38
CCDC28A-202ENST00000611852 NARSO43776 548 aaKnown RBP17.4■□□□□ 0.38
CCDC28A-202ENST00000611852 LCP1P13796 627 aa17.4■□□□□ 0.38
CCDC28A-202ENST00000611852 ZNF268Q14587 947 aaPredicted RBP17.4■□□□□ 0.38
CCDC28A-202ENST00000611852 FIGNQ5HY92 759 aa17.4■□□□□ 0.38
CCDC28A-202ENST00000611852 HECTD3Q5T447 861 aa17.4■□□□□ 0.38
CCDC28A-202ENST00000611852 TAF3Q5VWG9 929 aa17.4■□□□□ 0.38
CCDC28A-202ENST00000611852 BHLHA9Q7RTU4 235 aa17.4■□□□□ 0.38
CCDC28A-202ENST00000611852 PASD1Q8IV76 773 aa17.4■□□□□ 0.38
CCDC28A-202ENST00000611852 SCML4Q8N228 414 aa17.4■□□□□ 0.38
CCDC28A-202ENST00000611852 CELF5Q8N6W0 485 aaKnown RBP17.4■□□□□ 0.38
CCDC28A-202ENST00000611852 LRRC3BQ96PB8 259 aa17.4■□□□□ 0.38
CCDC28A-202ENST00000611852 SLC4A5Q9BY07 1137 aa17.4■□□□□ 0.38
CCDC28A-202ENST00000611852 CYLDQ9NQC7 956 aa17.4■□□□□ 0.38
CCDC28A-202ENST00000611852 CNGB3Q9NQW8 809 aa17.4■□□□□ 0.38
CCDC28A-202ENST00000611852 ST7Q9NRC1 585 aa17.4■□□□□ 0.38
CCDC28A-202ENST00000611852 NOCTQ9UK39 431 aaKnown RBP17.4■□□□□ 0.38
CCDC28A-202ENST00000611852 MYO6Q9UM54 1294 aa17.4■□□□□ 0.38
CCDC28A-202ENST00000611852 DUSP12Q9UNI6 340 aa17.4■□□□□ 0.38
CCDC28A-202ENST00000611852 PI4K2BG5E9Z4 385 aa17.39■□□□□ 0.37
CCDC28A-202ENST00000611852 PIK3R2O00459 728 aa17.39■□□□□ 0.37
CCDC28A-202ENST00000611852 DPYSL4O14531 572 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms