RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 PRR5-ARHGAP8B1AHC4 643 aa16.74■□□□□ 0.27
VRK3-221ENST00000600284 CETN3O15182 167 aa16.74■□□□□ 0.27
VRK3-221ENST00000600284 STX10O60499 249 aa16.74■□□□□ 0.27
VRK3-221ENST00000600284 TRIM49P0CI25 452 aa16.74■□□□□ 0.27
VRK3-221ENST00000600284 TRIM49CP0CI26 452 aa16.74■□□□□ 0.27
VRK3-221ENST00000600284 MBL2P11226 248 aaPredicted RBP16.74■□□□□ 0.27
VRK3-221ENST00000600284 ARHGAP8P85298 464 aa16.74■□□□□ 0.27
VRK3-221ENST00000600284 PUM1Q14671 1186 aaKnown RBP eCLIP16.74■□□□□ 0.27
VRK3-221ENST00000600284 KRT39Q6A163 491 aa16.74■□□□□ 0.27
VRK3-221ENST00000600284 HEATR6Q6AI08 1181 aaKnown RBP16.74■□□□□ 0.27
VRK3-221ENST00000600284 PKN3Q6P5Z2 889 aa16.74■□□□□ 0.27
VRK3-221ENST00000600284 PRR23BQ6ZRT6 265 aa16.74■□□□□ 0.27
VRK3-221ENST00000600284 FILIP1Q7Z7B0 1213 aa16.74■□□□□ 0.27
VRK3-221ENST00000600284 SCAMP5Q8TAC9 235 aa16.74■□□□□ 0.27
VRK3-221ENST00000600284 SLC2A14Q8TDB8 520 aa16.74■□□□□ 0.27
VRK3-221ENST00000600284 TAS1R2Q8TE23 839 aa16.74■□□□□ 0.27
VRK3-221ENST00000600284 RMDN1Q96DB5 314 aa16.74■□□□□ 0.27
VRK3-221ENST00000600284 OTUB2Q96DC9 234 aa16.74■□□□□ 0.27
VRK3-221ENST00000600284 HNRNPABQ99729 332 aaKnown RBP16.74■□□□□ 0.27
VRK3-221ENST00000600284 SMOQ99835 787 aa16.74■□□□□ 0.27
VRK3-221ENST00000600284 NT5C1AQ9BXI3 368 aa16.74■□□□□ 0.27
VRK3-221ENST00000600284 NIF3L1Q9GZT8 377 aa16.74■□□□□ 0.27
VRK3-221ENST00000600284 FAM124BQ9H5Z6 455 aaPredicted RBP16.74■□□□□ 0.27
VRK3-221ENST00000600284 KRT82Q9NSB4 513 aa16.74■□□□□ 0.27
VRK3-221ENST00000600284 CHORDC1Q9UHD1 332 aaPredicted RBP16.74■□□□□ 0.27
VRK3-221ENST00000600284 WDR87Q6ZQQ6 2873 aa16.74■□□□□ 0.27
VRK3-221ENST00000600284 COCHO43405 550 aa16.73■□□□□ 0.27
VRK3-221ENST00000600284 SMC2O95347 1197 aa16.73■□□□□ 0.27
VRK3-221ENST00000600284 CCDC130P13994 396 aa16.73■□□□□ 0.27
VRK3-221ENST00000600284 TGM1P22735 817 aa16.73■□□□□ 0.27
VRK3-221ENST00000600284 EIF2DP41214 584 aaKnown RBP16.73■□□□□ 0.27
VRK3-221ENST00000600284 PNOCQ13519 176 aa16.73■□□□□ 0.27
VRK3-221ENST00000600284 ZNF658Q5TYW1 1059 aaPredicted RBP16.73■□□□□ 0.27
VRK3-221ENST00000600284 SYT13Q7L8C5 426 aa16.73■□□□□ 0.27
VRK3-221ENST00000600284 TTC39CQ8N584 583 aa16.73■□□□□ 0.27
VRK3-221ENST00000600284 ZMIZ2Q8NF64 920 aa16.73■□□□□ 0.27
VRK3-221ENST00000600284 ENGASEQ8NFI3 743 aa16.73■□□□□ 0.27
VRK3-221ENST00000600284 SPATA20Q8TB22 786 aa16.73■□□□□ 0.27
VRK3-221ENST00000600284 ACDQ96AP0 544 aa16.73■□□□□ 0.27
VRK3-221ENST00000600284 TIGD1Q96MW7 591 aa16.73■□□□□ 0.27
VRK3-221ENST00000600284 APOBEC3GQ9HC16 384 aaKnown RBP16.73■□□□□ 0.27
VRK3-221ENST00000600284 PNPLA8Q9NP80 782 aa16.73■□□□□ 0.27
VRK3-221ENST00000600284 SMPD4Q9NXE4 827 aa16.73■□□□□ 0.27
VRK3-221ENST00000600284 DLL3Q9NYJ7 618 aa16.73■□□□□ 0.27
VRK3-221ENST00000600284 CFAP97Q9P2B7 532 aa16.73■□□□□ 0.27
VRK3-221ENST00000600284 HMGXB4Q9UGU5 601 aa16.73■□□□□ 0.27
VRK3-221ENST00000600284 HOOK1Q9UJC3 728 aaKnown RBP16.73■□□□□ 0.27
VRK3-221ENST00000600284 FRYLO94915 3013 aa16.73■□□□□ 0.27
VRK3-221ENST00000600284 CILPO75339 1184 aa16.72■□□□□ 0.27
VRK3-221ENST00000600284 BEST1O76090 585 aa16.72■□□□□ 0.27
VRK3-221ENST00000600284 FAM200BP0CF97 657 aa16.72■□□□□ 0.27
VRK3-221ENST00000600284 EPB41P11171 864 aaKnown RBP16.72■□□□□ 0.27
VRK3-221ENST00000600284 OPRD1P41143 372 aa16.72■□□□□ 0.27
VRK3-221ENST00000600284 PRCPP42785 496 aa16.72■□□□□ 0.27
VRK3-221ENST00000600284 MAP3K7CLP57077 242 aa16.72■□□□□ 0.27
VRK3-221ENST00000600284 LMNB2Q03252 620 aa16.72■□□□□ 0.27
VRK3-221ENST00000600284 DHCR24Q15392 516 aa16.72■□□□□ 0.27
VRK3-221ENST00000600284 NAIF1Q69YI7 327 aaPredicted RBP16.72■□□□□ 0.27
VRK3-221ENST00000600284 CEP68Q76N32 757 aa16.72■□□□□ 0.27
VRK3-221ENST00000600284 ELOA2Q8IYF1 753 aaPredicted RBP16.72■□□□□ 0.27
VRK3-221ENST00000600284 C12orf29Q8N999 325 aa16.72■□□□□ 0.27
VRK3-221ENST00000600284 RPLP0P6Q8NHW5 317 aa16.72■□□□□ 0.27
VRK3-221ENST00000600284 EZH1Q92800 747 aaPredicted RBP16.72■□□□□ 0.27
VRK3-221ENST00000600284 CYFIP2Q96F07 1278 aa16.72■□□□□ 0.27
VRK3-221ENST00000600284 TLR8Q9NR97 1041 aaKnown RBP16.72■□□□□ 0.27
VRK3-221ENST00000600284 FAM49BQ9NUQ9 324 aa16.72■□□□□ 0.27
VRK3-221ENST00000600284 HELZP42694 1942 aaKnown RBP16.72■□□□□ 0.27
VRK3-221ENST00000600284 FOXD2O60548 495 aaPredicted RBP16.71■□□□□ 0.27
VRK3-221ENST00000600284 ADH1CP00326 375 aa16.71■□□□□ 0.27
VRK3-221ENST00000600284 CYP17A1P05093 508 aa16.71■□□□□ 0.27
VRK3-221ENST00000600284 FKBP3Q00688 224 aaKnown RBP16.71■□□□□ 0.27
VRK3-221ENST00000600284 ORC1Q13415 861 aa16.71■□□□□ 0.27
VRK3-221ENST00000600284 LPAL2Q16609 132 aa16.71■□□□□ 0.27
VRK3-221ENST00000600284 GAB4Q2WGN9 574 aa16.71■□□□□ 0.27
VRK3-221ENST00000600284 RHBDF2Q6PJF5 856 aa16.71■□□□□ 0.27
VRK3-221ENST00000600284 CLEC20AQ6ZU45 233 aa16.71■□□□□ 0.27
VRK3-221ENST00000600284 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.71■□□□□ 0.27
VRK3-221ENST00000600284 SMYD4Q8IYR2 804 aaPredicted RBP16.71■□□□□ 0.27
VRK3-221ENST00000600284 FBXL13Q8NEE6 735 aa16.71■□□□□ 0.27
VRK3-221ENST00000600284 WHAMMQ8TF30 809 aa16.71■□□□□ 0.27
VRK3-221ENST00000600284 GAB3Q8WWW8 586 aa16.71■□□□□ 0.27
VRK3-221ENST00000600284 ZFRQ96KR1 1074 aaKnown RBP16.71■□□□□ 0.27
VRK3-221ENST00000600284 TWNKQ96RR1 684 aa16.71■□□□□ 0.27
VRK3-221ENST00000600284 TSG101Q99816 390 aa16.71■□□□□ 0.27
VRK3-221ENST00000600284 RAB20Q9NX57 234 aa16.71■□□□□ 0.27
VRK3-221ENST00000600284 GMIPQ9P107 970 aa16.71■□□□□ 0.27
VRK3-221ENST00000600284 SCML2Q9UQR0 700 aa16.71■□□□□ 0.27
VRK3-221ENST00000600284 PCDHA5Q9Y5H7 936 aa16.71■□□□□ 0.27
VRK3-221ENST00000600284 A0A0A0MRY4 1105 aa16.7■□□□□ 0.26
VRK3-221ENST00000600284 SLC16A3O15427 465 aaKnown RBP16.7■□□□□ 0.26
VRK3-221ENST00000600284 ADORA2BP29275 332 aa16.7■□□□□ 0.26
VRK3-221ENST00000600284 MXI1P50539 228 aa16.7■□□□□ 0.26
VRK3-221ENST00000600284 SRSF5Q13243 272 aaKnown RBP16.7■□□□□ 0.26
VRK3-221ENST00000600284 CACNA2D4Q7Z3S7 1137 aa16.7■□□□□ 0.26
VRK3-221ENST00000600284 ZC3H3Q8IXZ2 948 aaKnown RBP16.7■□□□□ 0.26
VRK3-221ENST00000600284 USP33Q8TEY7 942 aa16.7■□□□□ 0.26
VRK3-221ENST00000600284 SMARCE1Q969G3 411 aa16.7■□□□□ 0.26
VRK3-221ENST00000600284 LOXL4Q96JB6 756 aa16.7■□□□□ 0.26
VRK3-221ENST00000600284 CCSER2Q9H7U1 834 aa16.7■□□□□ 0.26
VRK3-221ENST00000600284 MMRN2Q9H8L6 949 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms