RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 SCML2Q9UQR0 700 aa16.05■□□□□ 0.16
LIG1-219ENST00000600055 FHOD1Q9Y613 1164 aa16.05■□□□□ 0.16
LIG1-219ENST00000600055 OBSL1O75147 1896 aa16.05■□□□□ 0.16
LIG1-219ENST00000600055 ARNTLO00327 626 aa16.04■□□□□ 0.16
LIG1-219ENST00000600055 XPO1O14980 1071 aaKnown RBP16.04■□□□□ 0.16
LIG1-219ENST00000600055 PFKPQ01813 784 aa16.04■□□□□ 0.16
LIG1-219ENST00000600055 BST2Q10589 180 aaKnown RBP16.04■□□□□ 0.16
LIG1-219ENST00000600055 ZNF268Q14587 947 aaPredicted RBP16.04■□□□□ 0.16
LIG1-219ENST00000600055 CNGA2Q16280 664 aa16.04■□□□□ 0.16
LIG1-219ENST00000600055 SKOR2Q2VWA4 1001 aaPredicted RBP16.04■□□□□ 0.16
LIG1-219ENST00000600055 KLHDC7AQ5VTJ3 777 aa16.04■□□□□ 0.16
LIG1-219ENST00000600055 SNX30Q5VWJ9 437 aa16.04■□□□□ 0.16
LIG1-219ENST00000600055 APTXQ7Z2E3 356 aaKnown RBP16.04■□□□□ 0.16
LIG1-219ENST00000600055 SH3RF2Q8TEC5 729 aa16.04■□□□□ 0.16
LIG1-219ENST00000600055 FAM81BQ96LP2 452 aa16.04■□□□□ 0.16
LIG1-219ENST00000600055 UBXN6Q9BZV1 441 aa16.04■□□□□ 0.16
LIG1-219ENST00000600055 MFSD1Q9H3U5 465 aa16.04■□□□□ 0.16
LIG1-219ENST00000600055 NMUR1Q9HB89 426 aa16.04■□□□□ 0.16
LIG1-219ENST00000600055 HEBP1Q9NRV9 189 aa16.04■□□□□ 0.16
LIG1-219ENST00000600055 OSER1Q9NX31 292 aa16.04■□□□□ 0.16
LIG1-219ENST00000600055 USP3Q9Y6I4 520 aa16.04■□□□□ 0.16
LIG1-219ENST00000600055 COL4A3Q01955 1670 aa16.04■□□□□ 0.16
LIG1-219ENST00000600055 A0A1W2PQH9 124 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 SMTNL1A8MU46 457 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 M0QYV0 167 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 FOXN3O00409 490 aaPredicted RBP16.03■□□□□ 0.16
LIG1-219ENST00000600055 CHADO15335 359 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 COCHO43405 550 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 OLFM2O95897 454 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 TPM2P07951 284 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 RGS7P49802 495 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 TKTL1P51854 596 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 SLC8A3P57103 927 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 SLC7A9P82251 487 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 IQCB1Q15051 598 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 NFKBIBQ15653 356 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 MLF2Q15773 248 aaPredicted RBP16.03■□□□□ 0.16
LIG1-219ENST00000600055 ZNF77Q15935 545 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 RAB41Q5JT25 222 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 HECTD3Q5T447 861 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 CWF19L1Q69YN2 538 aaKnown RBP16.03■□□□□ 0.16
LIG1-219ENST00000600055 DENND1BQ6P3S1 775 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 SCD5Q86SK9 330 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 FBXL6Q8N531 539 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 ANKRD20A12PQ8NF67 263 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 FLCNQ8NFG4 579 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 TTC8Q8TAM2 541 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 NDRG1Q92597 394 aaKnown RBP16.03■□□□□ 0.16
LIG1-219ENST00000600055 IRF7Q92985 503 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 SECISBP2LQ93073 1101 aaKnown RBP16.03■□□□□ 0.16
LIG1-219ENST00000600055 KIF9Q9HAQ2 790 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 TLR8Q9NR97 1041 aaKnown RBP16.03■□□□□ 0.16
LIG1-219ENST00000600055 GKN1Q9NS71 199 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 SMPD4Q9NXE4 827 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 ARHGAP26Q9UNA1 814 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 CPQQ9Y646 472 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 DENND4CQ5VZ89 1909 aa16.03■□□□□ 0.16
LIG1-219ENST00000600055 NUP210Q8TEM1 1887 aaPredicted RBP16.02■□□□□ 0.16
LIG1-219ENST00000600055 LRRC10BA6NIK2 292 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 SHISA7A6NL88 538 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 LGALS16A8MUM7 142 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 PIK3R2O00459 728 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 STK25O00506 426 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 THAP12O43422 761 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 GABBR2O75899 941 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 TBX18O95935 607 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 SETSIPP0DME0 302 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 MBL2P11226 248 aaPredicted RBP16.02■□□□□ 0.16
LIG1-219ENST00000600055 PFKLP17858 780 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 CD72P21854 359 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 GNA15P30679 374 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 PLA2G4AP47712 749 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 PDE6CP51160 858 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 VCPP55072 806 aaKnown RBP16.02■□□□□ 0.16
LIG1-219ENST00000600055 TNK2Q07912 1038 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 USP4Q13107 963 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 RAPGEF1Q13905 1077 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 DRAP1Q14919 205 aaPredicted RBP16.02■□□□□ 0.16
LIG1-219ENST00000600055 STILQ15468 1287 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 ARHGAP29Q52LW3 1261 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 FKBP15Q5T1M5 1219 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 TRIM68Q6AZZ1 485 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 PMF1Q6P1K2 205 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 CCDC186Q7Z3E2 898 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 SLC35F5Q8WV83 523 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 ZNF606Q8WXB4 792 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 DNASE1L2Q92874 299 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 NAA15Q9BXJ9 866 aaKnown RBP16.02■□□□□ 0.16
LIG1-219ENST00000600055 ULBP1Q9BZM6 244 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 GANQ9H2C0 597 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 TBC1D17Q9HA65 648 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 CBX8Q9HC52 389 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 THG1LQ9NWX6 298 aaKnown RBP16.02■□□□□ 0.16
LIG1-219ENST00000600055 NUDT5Q9UKK9 219 aa16.02■□□□□ 0.16
LIG1-219ENST00000600055 ANAPC1Q9H1A4 1944 aa16.02■□□□□ 0.15
LIG1-219ENST00000600055 PATJQ8NI35 1801 aa16.01■□□□□ 0.15
LIG1-219ENST00000600055 ZNF638Q14966 1978 aaKnown RBP16.01■□□□□ 0.15
LIG1-219ENST00000600055 LEFTY2O00292 366 aa16.01■□□□□ 0.15
LIG1-219ENST00000600055 SCAMP3O14828 347 aaKnown RBP16.01■□□□□ 0.15
LIG1-219ENST00000600055 EPHB6O15197 1021 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms