RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 GMIPQ9P107 970 aa12.87□□□□□ -0.35
LIG1-217ENST00000599165 CHORDC1Q9UHD1 332 aaPredicted RBP12.87□□□□□ -0.35
LIG1-217ENST00000599165 CPQQ9Y646 472 aa12.87□□□□□ -0.35
LIG1-217ENST00000599165 ATP8B3O60423 1300 aa12.87□□□□□ -0.35
LIG1-217ENST00000599165 SPTBN4Q9H254 2564 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 ANTXRLA6NF34 631 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 K7ESF4 209 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 TRDMT1O14717 391 aaKnown RBP12.86□□□□□ -0.35
LIG1-217ENST00000599165 SCAMP3O14828 347 aaKnown RBP12.86□□□□□ -0.35
LIG1-217ENST00000599165 NCAM2O15394 837 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 LAMTOR5O43504 91 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 LILRB5O75023 590 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 RTN3O95197 1032 aaPredicted RBP12.86□□□□□ -0.35
LIG1-217ENST00000599165 CHRM1P11229 460 aaPredicted RBP12.86□□□□□ -0.35
LIG1-217ENST00000599165 GJA4P35212 333 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 PPP3CCP48454 512 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 UBE2HP62256 183 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 CSTF1Q05048 431 aaKnown RBP12.86□□□□□ -0.35
LIG1-217ENST00000599165 DMWDQ09019 674 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 PDGFRLQ15198 375 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 ZNF394Q53GI3 561 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 TCERG1LQ5VWI1 586 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 FILIP1Q7Z7B0 1213 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 SUMF1Q8NBK3 374 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 OVCA2Q8WZ82 227 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 NKD2Q969F2 451 aaPredicted RBP12.86□□□□□ -0.35
LIG1-217ENST00000599165 FBXO32Q969P5 355 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 CEP63Q96MT8 703 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 SLITRK1Q96PX8 696 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 GTPBP4Q9BZE4 634 aaKnown RBP12.86□□□□□ -0.35
LIG1-217ENST00000599165 IMPG2Q9BZV3 1241 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 CCSER2Q9H7U1 834 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 ECT2Q9H8V3 914 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 NMUR1Q9HB89 426 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 DUS2Q9NX74 493 aaKnown RBP12.86□□□□□ -0.35
LIG1-217ENST00000599165 SMPD4Q9NXE4 827 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 EHD2Q9NZN4 543 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 ARMCX3Q9UH62 379 aaPredicted RBP12.86□□□□□ -0.35
LIG1-217ENST00000599165 HOOK1Q9UJC3 728 aaKnown RBP12.86□□□□□ -0.35
LIG1-217ENST00000599165 CTNND2Q9UQB3 1225 aa12.86□□□□□ -0.35
LIG1-217ENST00000599165 PMM2O15305 246 aa12.85□□□□□ -0.35
LIG1-217ENST00000599165 GREM1O60565 184 aa12.85□□□□□ -0.35
LIG1-217ENST00000599165 FAM200BP0CF97 657 aa12.85□□□□□ -0.35
LIG1-217ENST00000599165 FMO5P49326 533 aa12.85□□□□□ -0.35
LIG1-217ENST00000599165 STX17P56962 302 aa12.85□□□□□ -0.35
LIG1-217ENST00000599165 MESP2Q0VG99 397 aa12.85□□□□□ -0.35
LIG1-217ENST00000599165 CUL2Q13617 745 aa12.85□□□□□ -0.35
LIG1-217ENST00000599165 CAMK4Q16566 473 aa12.85□□□□□ -0.35
LIG1-217ENST00000599165 C1orf228Q6PIY5 440 aa12.85□□□□□ -0.35
LIG1-217ENST00000599165 TRIM59Q8IWR1 403 aa12.85□□□□□ -0.35
LIG1-217ENST00000599165 TTC16Q8NEE8 873 aa12.85□□□□□ -0.35
LIG1-217ENST00000599165 KAT5Q92993 513 aa12.85□□□□□ -0.35
LIG1-217ENST00000599165 IER2Q9BTL4 223 aa12.85□□□□□ -0.35
LIG1-217ENST00000599165 POLR3BQ9NW08 1133 aaPredicted RBP12.85□□□□□ -0.35
LIG1-217ENST00000599165 COMMD8Q9NX08 183 aa12.85□□□□□ -0.35
LIG1-217ENST00000599165 KIAA1468Q9P260 1216 aa12.85□□□□□ -0.35
LIG1-217ENST00000599165 MYO18AQ92614 2054 aaKnown RBP12.85□□□□□ -0.35
LIG1-217ENST00000599165 WDR87Q6ZQQ6 2873 aa12.85□□□□□ -0.35
LIG1-217ENST00000599165 TULP2O00295 520 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 CYP26A1O43174 497 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 STX10O60499 249 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 PAPSS2O95340 614 aaPredicted RBP12.84□□□□□ -0.35
LIG1-217ENST00000599165 TBX18O95935 607 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 ABL1P00519 1130 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 EGFP01133 1207 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 CYP17A1P05093 508 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 ACO1P21399 889 aaKnown RBP12.84□□□□□ -0.35
LIG1-217ENST00000599165 OPRD1P41143 372 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 PPP1R2P41236 205 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 IFNAR2P48551 515 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 TUBP50607 506 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 GALK1P51570 392 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 KIF11P52732 1056 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 MARSP56192 900 aaKnown RBP12.84□□□□□ -0.35
LIG1-217ENST00000599165 LRMPQ12912 555 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 DGKKQ5KSL6 1271 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 ARHGAP17Q68EM7 881 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 CC2D1AQ6P1N0 951 aaPredicted RBP12.84□□□□□ -0.35
LIG1-217ENST00000599165 CLEC17AQ6ZS10 378 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 SCD5Q86SK9 330 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 TTC30AQ86WT1 665 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 SPEM1Q8N4L4 309 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 PDZD8Q8NEN9 1154 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 JAKMIP2Q96AA8 810 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 TMEM176AQ96HP8 235 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 ZSWIM1Q9BR11 485 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 DUSP16Q9BY84 665 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 METTL14Q9HCE5 456 aaKnown RBP12.84□□□□□ -0.35
LIG1-217ENST00000599165 PNPLA8Q9NP80 782 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 CFAP97Q9P2B7 532 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 SCML2Q9UQR0 700 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 USP3Q9Y6I4 520 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 CEP250Q9BV73 2442 aa12.84□□□□□ -0.35
LIG1-217ENST00000599165 SPAG17Q6Q759 2223 aa12.83□□□□□ -0.36
LIG1-217ENST00000599165 MBL2P11226 248 aaPredicted RBP12.83□□□□□ -0.36
LIG1-217ENST00000599165 PDE6CP51160 858 aa12.83□□□□□ -0.36
LIG1-217ENST00000599165 PAK1Q13153 545 aa12.83□□□□□ -0.36
LIG1-217ENST00000599165 STIM1Q13586 685 aa12.83□□□□□ -0.36
LIG1-217ENST00000599165 LRRC32Q14392 662 aa12.83□□□□□ -0.36
LIG1-217ENST00000599165 HECTD3Q5T447 861 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms