RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 EFR3BQ9Y2G0 817 aa17.85■□□□□ 0.45
SHKBP1-216ENST00000598201 GIT1Q9Y2X7 761 aa17.85■□□□□ 0.45
SHKBP1-216ENST00000598201 MKI67P46013 3256 aaKnown RBP17.85■□□□□ 0.45
SHKBP1-216ENST00000598201 CASTOR2A6NHX0 329 aa17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 CLDN5O00501 218 aa17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 DPYSL4O14531 572 aa17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 CST8O60676 142 aa17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 SHBGP04278 402 aa17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 ZSCAN5DPP0CG00 497 aa17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 LCP1P13796 627 aa17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 TFE3P19532 575 aaPredicted RBP17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 CHKAP35790 457 aa17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 VCPP55072 806 aaKnown RBP17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 PTK7Q13308 1070 aa17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 ZNF771Q7L3S4 317 aaPredicted RBP17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 GSTA5Q7RTV2 222 aa17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 FAM129AQ9BZQ8 928 aa17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 TIMM13Q9Y5L4 95 aaPredicted RBP17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 ETS1P14921 441 aa17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 PTPN1P18031 435 aaKnown RBP17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 MMRN1Q13201 1228 aa17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 DNAJC21Q5F1R6 531 aaKnown RBP17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 PAQR9Q6ZVX9 377 aa17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 BBS12Q6ZW61 710 aa17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 CCDC25Q86WR0 208 aa17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 ALLCQ8N6M5 410 aa17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 SLC35B2Q8TB61 432 aa17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 FAM172AQ8WUF8 416 aa17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 NKD2Q969F2 451 aaPredicted RBP17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 ATP6V1G3Q96LB4 118 aa17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 PWWP2AQ96N64 755 aa17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 ADAM33Q9BZ11 813 aa17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 NGRNQ9NPE2 291 aaKnown RBP17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 NOD1Q9Y239 953 aa17.84■□□□□ 0.45
SHKBP1-216ENST00000598201 ZNF623O75123 536 aa17.83■□□□□ 0.45
SHKBP1-216ENST00000598201 BEST1O76090 585 aa17.83■□□□□ 0.45
SHKBP1-216ENST00000598201 OTUD4Q01804 1114 aaKnown RBP17.83■□□□□ 0.45
SHKBP1-216ENST00000598201 ZDHHC17Q8IUH5 632 aa17.83■□□□□ 0.45
SHKBP1-216ENST00000598201 CCDC89Q8N998 374 aa17.83■□□□□ 0.45
SHKBP1-216ENST00000598201 ACTL9Q8TC94 416 aa17.83■□□□□ 0.45
SHKBP1-216ENST00000598201 HNRNPABQ99729 332 aaKnown RBP17.83■□□□□ 0.45
SHKBP1-216ENST00000598201 ADAM2Q99965 735 aa17.83■□□□□ 0.45
SHKBP1-216ENST00000598201 TMEM121Q9BTD3 319 aa17.83■□□□□ 0.45
SHKBP1-216ENST00000598201 CALN1Q9BXU9 219 aa17.83■□□□□ 0.45
SHKBP1-216ENST00000598201 C10orf88Q9H8K7 445 aa17.83■□□□□ 0.45
SHKBP1-216ENST00000598201 DRG1Q9Y295 367 aaKnown RBP17.83■□□□□ 0.45
SHKBP1-216ENST00000598201 A0A0U1RQF3 1178 aa17.83■□□□□ 0.44
SHKBP1-216ENST00000598201 PRPSAP2O60256 369 aa17.83■□□□□ 0.44
SHKBP1-216ENST00000598201 ENDOD1O94919 500 aa17.83■□□□□ 0.44
SHKBP1-216ENST00000598201 POMCP01189 267 aa17.83■□□□□ 0.44
SHKBP1-216ENST00000598201 MYZAPP0CAP1 466 aa17.83■□□□□ 0.44
SHKBP1-216ENST00000598201 RARGP13631 454 aa17.83■□□□□ 0.44
SHKBP1-216ENST00000598201 SDC4P31431 198 aa17.83■□□□□ 0.44
SHKBP1-216ENST00000598201 ARSEP51690 589 aa17.83■□□□□ 0.44
SHKBP1-216ENST00000598201 ATN1P54259 1190 aaPredicted RBP17.83■□□□□ 0.44
SHKBP1-216ENST00000598201 SNX16P57768 344 aa17.83■□□□□ 0.44
SHKBP1-216ENST00000598201 SLC29A2Q14542 456 aa17.83■□□□□ 0.44
SHKBP1-216ENST00000598201 FAM26DQ5JW98 314 aa17.83■□□□□ 0.44
SHKBP1-216ENST00000598201 SCYL2Q6P3W7 929 aa17.83■□□□□ 0.44
SHKBP1-216ENST00000598201 SLC39A5Q6ZMH5 540 aa17.83■□□□□ 0.44
SHKBP1-216ENST00000598201 UBE2Q1Q7Z7E8 422 aa17.83■□□□□ 0.44
SHKBP1-216ENST00000598201 PIGZQ86VD9 579 aa17.83■□□□□ 0.44
SHKBP1-216ENST00000598201 TRAIPQ9BWF2 469 aa17.83■□□□□ 0.44
SHKBP1-216ENST00000598201 CENPHQ9H3R5 247 aa17.83■□□□□ 0.44
SHKBP1-216ENST00000598201 CRTAC1Q9NQ79 661 aa17.83■□□□□ 0.44
SHKBP1-216ENST00000598201 GPATCH2LQ9NWQ4 482 aa17.83■□□□□ 0.44
SHKBP1-216ENST00000598201 DDX43Q9NXZ2 648 aaKnown RBP17.83■□□□□ 0.44
SHKBP1-216ENST00000598201 ANAPC5Q9UJX4 755 aa17.83■□□□□ 0.44
SHKBP1-216ENST00000598201 ARVCFO00192 962 aa17.82■□□□□ 0.44
SHKBP1-216ENST00000598201 NUDT17P0C025 328 aa17.82■□□□□ 0.44
SHKBP1-216ENST00000598201 CDH6P55285 790 aa17.82■□□□□ 0.44
SHKBP1-216ENST00000598201 HDAC4P56524 1084 aa17.82■□□□□ 0.44
SHKBP1-216ENST00000598201 PLCB3Q01970 1234 aa17.82■□□□□ 0.44
SHKBP1-216ENST00000598201 LMNB2Q03252 620 aa17.82■□□□□ 0.44
SHKBP1-216ENST00000598201 SLMAPQ14BN4 828 aa17.82■□□□□ 0.44
SHKBP1-216ENST00000598201 UPP1Q16831 310 aa17.82■□□□□ 0.44
SHKBP1-216ENST00000598201 MDH1BQ5I0G3 518 aa17.82■□□□□ 0.44
SHKBP1-216ENST00000598201 IZUMO3Q5VZ72 239 aa17.82■□□□□ 0.44
SHKBP1-216ENST00000598201 SLC26A9Q7LBE3 791 aa17.82■□□□□ 0.44
SHKBP1-216ENST00000598201 RFX6Q8HWS3 928 aa17.82■□□□□ 0.44
SHKBP1-216ENST00000598201 SLC43A3Q8NBI5 491 aa17.82■□□□□ 0.44
SHKBP1-216ENST00000598201 NDRG1Q92597 394 aaKnown RBP17.82■□□□□ 0.44
SHKBP1-216ENST00000598201 DUSP16Q9BY84 665 aa17.82■□□□□ 0.44
SHKBP1-216ENST00000598201 TRPV6Q9H1D0 765 aa17.82■□□□□ 0.44
SHKBP1-216ENST00000598201 RSAD1Q9HA92 442 aa17.82■□□□□ 0.44
SHKBP1-216ENST00000598201 DNAJC17Q9NVM6 304 aaKnown RBP17.82■□□□□ 0.44
SHKBP1-216ENST00000598201 XPO1O14980 1071 aaKnown RBP17.81■□□□□ 0.44
SHKBP1-216ENST00000598201 ITGAVP06756 1048 aa17.81■□□□□ 0.44
SHKBP1-216ENST00000598201 FAM163BP0C2L3 166 aa17.81■□□□□ 0.44
SHKBP1-216ENST00000598201 PECAM1P16284 738 aaPredicted RBP17.81■□□□□ 0.44
SHKBP1-216ENST00000598201 DPYSL3Q14195 570 aa17.81■□□□□ 0.44
SHKBP1-216ENST00000598201 P3H1Q32P28 736 aa17.81■□□□□ 0.44
SHKBP1-216ENST00000598201 ZC3H12AQ5D1E8 599 aaKnown RBP17.81■□□□□ 0.44
SHKBP1-216ENST00000598201 DENND2CQ68D51 928 aa17.81■□□□□ 0.44
SHKBP1-216ENST00000598201 UHMK1Q8TAS1 419 aaKnown RBP17.81■□□□□ 0.44
SHKBP1-216ENST00000598201 HSFY1Q96LI6 401 aa17.81■□□□□ 0.44
SHKBP1-216ENST00000598201 C11orf84Q9BUA3 381 aaPredicted RBP17.81■□□□□ 0.44
SHKBP1-216ENST00000598201 ADAM7Q9H2U9 754 aa17.81■□□□□ 0.44
SHKBP1-216ENST00000598201 CYLDQ9NQC7 956 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms