RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 AP3M2P53677 418 aa11.12□□□□□ -0.63
LIG1-213ENST00000596672 SLC5A3P53794 718 aa11.12□□□□□ -0.63
LIG1-213ENST00000596672 INCA1Q0VD86 236 aa11.12□□□□□ -0.63
LIG1-213ENST00000596672 ADAM9Q13443 819 aa11.12□□□□□ -0.63
LIG1-213ENST00000596672 LRRC32Q14392 662 aa11.12□□□□□ -0.63
LIG1-213ENST00000596672 ANKRD40Q6AI12 368 aa11.12□□□□□ -0.63
LIG1-213ENST00000596672 ZC3H14Q6PJT7 736 aaKnown RBP11.12□□□□□ -0.63
LIG1-213ENST00000596672 CLEC20AQ6ZU45 233 aa11.12□□□□□ -0.63
LIG1-213ENST00000596672 SCD5Q86SK9 330 aa11.12□□□□□ -0.63
LIG1-213ENST00000596672 FAM186BQ8IYM0 893 aa11.12□□□□□ -0.63
LIG1-213ENST00000596672 NUP93Q8N1F7 819 aa11.12□□□□□ -0.63
LIG1-213ENST00000596672 CEP295NLQ96MC4 621 aa11.12□□□□□ -0.63
LIG1-213ENST00000596672 P2RY13Q9BPV8 354 aa11.12□□□□□ -0.63
LIG1-213ENST00000596672 IER2Q9BTL4 223 aa11.12□□□□□ -0.63
LIG1-213ENST00000596672 MMRN2Q9H8L6 949 aa11.12□□□□□ -0.63
LIG1-213ENST00000596672 ZDHHC4Q9NPG8 344 aa11.12□□□□□ -0.63
LIG1-213ENST00000596672 KRT82Q9NSB4 513 aa11.12□□□□□ -0.63
LIG1-213ENST00000596672 CFAP97Q9P2B7 532 aa11.12□□□□□ -0.63
LIG1-213ENST00000596672 R3HCC1Q9Y3T6 440 aaKnown RBP11.12□□□□□ -0.63
LIG1-213ENST00000596672 PCDHA5Q9Y5H7 936 aa11.12□□□□□ -0.63
LIG1-213ENST00000596672 PI4KAP42356 2102 aa11.12□□□□□ -0.63
LIG1-213ENST00000596672 NUP205Q92621 2012 aa11.11□□□□□ -0.63
LIG1-213ENST00000596672 MDM4O15151 490 aa11.11□□□□□ -0.63
LIG1-213ENST00000596672 CALUO43852 315 aaPredicted RBP11.11□□□□□ -0.63
LIG1-213ENST00000596672 CILPO75339 1184 aa11.11□□□□□ -0.63
LIG1-213ENST00000596672 ABL1P00519 1130 aa11.11□□□□□ -0.63
LIG1-213ENST00000596672 ANXA13P27216 316 aa11.11□□□□□ -0.63
LIG1-213ENST00000596672 YWHAQP27348 245 aa11.11□□□□□ -0.63
LIG1-213ENST00000596672 ADORA2BP29275 332 aa11.11□□□□□ -0.63
LIG1-213ENST00000596672 HOXA6P31267 233 aa11.11□□□□□ -0.63
LIG1-213ENST00000596672 PIK3CAP42336 1068 aa11.11□□□□□ -0.63
LIG1-213ENST00000596672 ID4P47928 161 aa11.11□□□□□ -0.63
LIG1-213ENST00000596672 MAP3K7CLP57077 242 aa11.11□□□□□ -0.63
LIG1-213ENST00000596672 DHCR24Q15392 516 aa11.11□□□□□ -0.63
LIG1-213ENST00000596672 CBWD6Q4V339 395 aa11.11□□□□□ -0.63
LIG1-213ENST00000596672 CBWD3Q5JTY5 395 aa11.11□□□□□ -0.63
LIG1-213ENST00000596672 CBWD5Q5RIA9 395 aa11.11□□□□□ -0.63
LIG1-213ENST00000596672 EMC10Q5UCC4 262 aa11.11□□□□□ -0.63
LIG1-213ENST00000596672 SNX30Q5VWJ9 437 aa11.11□□□□□ -0.63
LIG1-213ENST00000596672 ISM2Q6H9L7 571 aa11.11□□□□□ -0.63
LIG1-213ENST00000596672 PHTF2Q8N3S3 785 aa11.11□□□□□ -0.63
LIG1-213ENST00000596672 SYNPOQ8N3V7 929 aa11.11□□□□□ -0.63
LIG1-213ENST00000596672 HNRNPABQ99729 332 aaKnown RBP11.11□□□□□ -0.63
LIG1-213ENST00000596672 MED10Q9BTT4 135 aa11.11□□□□□ -0.63
LIG1-213ENST00000596672 FAM126AQ9BYI3 521 aaPredicted RBP11.11□□□□□ -0.63
LIG1-213ENST00000596672 DLL3Q9NYJ7 618 aa11.11□□□□□ -0.63
LIG1-213ENST00000596672 CHMP5Q9NZZ3 219 aa11.11□□□□□ -0.63
LIG1-213ENST00000596672 NUDT5Q9UKK9 219 aa11.11□□□□□ -0.63
LIG1-213ENST00000596672 THADAQ6YHU6 1953 aa11.1□□□□□ -0.63
LIG1-213ENST00000596672 MED19A0JLT2 244 aaPredicted RBP11.1□□□□□ -0.63
LIG1-213ENST00000596672 TULP2O00295 520 aa11.1□□□□□ -0.63
LIG1-213ENST00000596672 DCLK1O15075 740 aa11.1□□□□□ -0.63
LIG1-213ENST00000596672 GABBR2O75899 941 aa11.1□□□□□ -0.63
LIG1-213ENST00000596672 CD58P19256 250 aa11.1□□□□□ -0.63
LIG1-213ENST00000596672 PSMC2P35998 433 aaKnown RBP11.1□□□□□ -0.63
LIG1-213ENST00000596672 IFNAR2P48551 515 aa11.1□□□□□ -0.63
LIG1-213ENST00000596672 SPEM2Q0P670 501 aa11.1□□□□□ -0.63
LIG1-213ENST00000596672 GRSF1Q12849 480 aaKnown RBP eCLIP11.1□□□□□ -0.63
LIG1-213ENST00000596672 PPP1R26Q5T8A7 1209 aaPredicted RBP11.1□□□□□ -0.63
LIG1-213ENST00000596672 CC2D1AQ6P1N0 951 aaPredicted RBP11.1□□□□□ -0.63
LIG1-213ENST00000596672 C1orf228Q6PIY5 440 aa11.1□□□□□ -0.63
LIG1-213ENST00000596672 INTS8Q75QN2 995 aaKnown RBP11.1□□□□□ -0.63
LIG1-213ENST00000596672 WDR5BQ86VZ2 330 aa11.1□□□□□ -0.63
LIG1-213ENST00000596672 LONP2Q86WA8 852 aa11.1□□□□□ -0.63
LIG1-213ENST00000596672 UNC93AQ86WB7 457 aa11.1□□□□□ -0.63
LIG1-213ENST00000596672 BBS7Q8IWZ6 715 aa11.1□□□□□ -0.63
LIG1-213ENST00000596672 FAM160A2Q8N612 972 aaPredicted RBP11.1□□□□□ -0.63
LIG1-213ENST00000596672 UBR7Q8N806 425 aa11.1□□□□□ -0.63
LIG1-213ENST00000596672 SLC4A11Q8NBS3 891 aa11.1□□□□□ -0.63
LIG1-213ENST00000596672 RPLP0P6Q8NHW5 317 aa11.1□□□□□ -0.63
LIG1-213ENST00000596672 USP33Q8TEY7 942 aa11.1□□□□□ -0.63
LIG1-213ENST00000596672 TAF4BQ92750 862 aa11.1□□□□□ -0.63
LIG1-213ENST00000596672 CD101Q93033 1021 aa11.1□□□□□ -0.63
LIG1-213ENST00000596672 FBXO32Q969P5 355 aa11.1□□□□□ -0.63
LIG1-213ENST00000596672 JAKMIP2Q96AA8 810 aa11.1□□□□□ -0.63
LIG1-213ENST00000596672 SMARCD1Q96GM5 515 aa11.1□□□□□ -0.63
LIG1-213ENST00000596672 HHIPQ96QV1 700 aa11.1□□□□□ -0.63
LIG1-213ENST00000596672 DUSP9Q99956 384 aaKnown RBP11.1□□□□□ -0.63
LIG1-213ENST00000596672 DMAP1Q9NPF5 467 aaPredicted RBP11.1□□□□□ -0.63
LIG1-213ENST00000596672 RXFP3Q9NSD7 469 aa11.1□□□□□ -0.63
LIG1-213ENST00000596672 FRMD4BQ9Y2L6 1034 aa11.1□□□□□ -0.63
LIG1-213ENST00000596672 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.1□□□□□ -0.63
LIG1-213ENST00000596672 ASCC3Q8N3C0 2202 aaKnown RBP11.1□□□□□ -0.63
LIG1-213ENST00000596672 CYP26A1O43174 497 aa11.09□□□□□ -0.63
LIG1-213ENST00000596672 GDF9O60383 454 aa11.09□□□□□ -0.63
LIG1-213ENST00000596672 CALCAP01258 141 aa11.09□□□□□ -0.63
LIG1-213ENST00000596672 MBL2P11226 248 aaPredicted RBP11.09□□□□□ -0.63
LIG1-213ENST00000596672 PFKLP17858 780 aa11.09□□□□□ -0.63
LIG1-213ENST00000596672 RAD23BP54727 409 aa11.09□□□□□ -0.63
LIG1-213ENST00000596672 SIM2Q14190 667 aaPredicted RBP11.09□□□□□ -0.63
LIG1-213ENST00000596672 CCDC6Q16204 474 aa11.09□□□□□ -0.63
LIG1-213ENST00000596672 RSPO4Q2I0M5 234 aaPredicted RBP11.09□□□□□ -0.63
LIG1-213ENST00000596672 EDRF1Q3B7T1 1238 aa11.09□□□□□ -0.63
LIG1-213ENST00000596672 ZNF394Q53GI3 561 aa11.09□□□□□ -0.63
LIG1-213ENST00000596672 COBLL1Q53SF7 1204 aa11.09□□□□□ -0.63
LIG1-213ENST00000596672 LY6G5CQ5SRR4 150 aa11.09□□□□□ -0.63
LIG1-213ENST00000596672 TMEM92Q6UXU6 159 aa11.09□□□□□ -0.63
LIG1-213ENST00000596672 BHLHA9Q7RTU4 235 aa11.09□□□□□ -0.63
LIG1-213ENST00000596672 KBTBD6Q86V97 674 aa11.09□□□□□ -0.63
LIG1-213ENST00000596672 TMEM25Q86YD3 366 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms