RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 MASTLQ96GX5 879 aa12.76□□□□□ -0.37
LIG1-207ENST00000594759 NSMCE3Q96MG7 304 aa12.76□□□□□ -0.37
LIG1-207ENST00000594759 PCDH12Q9NPG4 1184 aa12.76□□□□□ -0.37
LIG1-207ENST00000594759 H3BNX3 289 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 TLR3O15455 904 aaKnown RBP12.75□□□□□ -0.37
LIG1-207ENST00000594759 CLASP2O75122 1294 aaKnown RBP12.75□□□□□ -0.37
LIG1-207ENST00000594759 T-ENOLP0DO92 83 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 SERPINB5P36952 375 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 PDK1Q15118 436 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 ANO4Q32M45 955 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 SPDYAQ5MJ70 313 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 TTC39BQ5VTQ0 682 aaPredicted RBP12.75□□□□□ -0.37
LIG1-207ENST00000594759 KRT39Q6A163 491 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 HELQQ8TDG4 1101 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 SEC14L1Q92503 715 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 TAMM41Q96BW9 452 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 REEP2Q9BRK0 252 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 SQORQ9Y6N5 450 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 ABHD2P08910 425 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 BMP3P12645 472 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 ADRA2BP18089 450 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 FUT2Q10981 343 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 MORF4L2Q15014 288 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 DPH6Q7L8W6 267 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 LNX1Q8TBB1 728 aaPredicted RBP12.75□□□□□ -0.37
LIG1-207ENST00000594759 ETNPPLQ8TBG4 499 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 PANX3Q96QZ0 392 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 CDRT15Q96T59 188 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 SEMA6AQ9H2E6 1030 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 C12orf65Q9H3J6 166 aaKnown RBP12.75□□□□□ -0.37
LIG1-207ENST00000594759 SMYD2Q9NRG4 433 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 SLC17A7Q9P2U7 560 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 XPO7Q9UIA9 1087 aaKnown RBP12.75□□□□□ -0.37
LIG1-207ENST00000594759 USP17L15C9J2P7 530 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 USP17L13C9JLJ4 530 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 USP17L11C9JVI0 530 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 USP17L18D6R9N7 530 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 USP17L22D6RA61 530 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 USP17L17D6RBQ6 530 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 USP17L19D6RCP7 530 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 USP17L20D6RJB6 530 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 FXR2P51116 673 aaKnown RBP eCLIP12.75□□□□□ -0.371e-6■■■■□ 25.2
LIG1-207ENST00000594759 USP17L24Q0WX57 530 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 C12orf60Q5U649 245 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 PDPK2PQ6A1A2 396 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 USP17L6PQ6QN14 398 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 FBXO11Q86XK2 927 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 TNIP2Q8NFZ5 429 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 GAB3Q8WWW8 586 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 USP13Q92995 863 aaPredicted RBP12.75□□□□□ -0.37
LIG1-207ENST00000594759 APOPT1Q96IL0 206 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 SRPK1Q96SB4 655 aaKnown RBP12.75□□□□□ -0.37
LIG1-207ENST00000594759 TRIM39Q9HCM9 518 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 MOSPD1Q9UJG1 213 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 SORCS3Q9UPU3 1222 aa12.75□□□□□ -0.37
LIG1-207ENST00000594759 MYH15Q9Y2K3 1946 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 TCRBV7S2A1N4TA0A589 114 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 TBKBP1A7MCY6 615 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 BAIAP3O94812 1187 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 ALAS1P13196 640 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 STT3AP46977 705 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 BFSP2Q13515 415 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 PRPSAP1Q14558 356 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 HPS6Q86YV9 775 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 HEPHQ9BQS7 1158 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 ANO3Q9BYT9 981 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 H0Y626 953 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 PSMD12O00232 456 aaPredicted RBP12.74□□□□□ -0.37
LIG1-207ENST00000594759 TPST1O60507 370 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 STAM2O75886 525 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 ZBTB7AO95365 584 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 RPA1P27694 616 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 CRKP46108 304 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 BST1Q10588 318 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 MYLK3Q32MK0 819 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 MROH9Q5TGP6 573 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 METTL21CQ5VZV1 264 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 JADE1Q6IE81 842 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 DNAJC24Q6P3W2 148 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 SLC7A5P1Q8MH63 180 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 AHI1Q8N157 1196 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 CENPSQ8N2Z9 138 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 OTUD5Q96G74 571 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 PLEKHA8Q96JA3 519 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 RPAP3Q9H6T3 665 aaPredicted RBP12.74□□□□□ -0.37
LIG1-207ENST00000594759 MARCH7Q9H992 704 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 POLR1BQ9H9Y6 1135 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 CLK4Q9HAZ1 481 aaKnown RBP12.74□□□□□ -0.37
LIG1-207ENST00000594759 VPS45Q9NRW7 570 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 XRN1Q8IZH2 1706 aaKnown RBP12.74□□□□□ -0.37
LIG1-207ENST00000594759 ZBTB39O15060 712 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 DCXO43602 365 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 GH2P01242 217 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 POLR2EP19388 210 aaKnown RBP12.74□□□□□ -0.37
LIG1-207ENST00000594759 MOGSQ13724 837 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 KBTBD2Q8IY47 623 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 FBXW8Q8N3Y1 598 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 KIFC3Q9BVG8 833 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 TRIM15Q9C019 465 aa12.74□□□□□ -0.37
LIG1-207ENST00000594759 NFAT5O94916 1531 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms