RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 MLF2Q15773 248 aaPredicted RBP15.36■□□□□ 0.05
VRK3-206ENST00000594090 ZNF77Q15935 545 aa15.36■□□□□ 0.05
VRK3-206ENST00000594090 ARHGAP44Q17R89 818 aa15.36■□□□□ 0.05
VRK3-206ENST00000594090 ARHGAP29Q52LW3 1261 aa15.36■□□□□ 0.05
VRK3-206ENST00000594090 DPY19L2P1Q6NXN4 242 aa15.36■□□□□ 0.05
VRK3-206ENST00000594090 LCLAT1Q6UWP7 414 aa15.36■□□□□ 0.05
VRK3-206ENST00000594090 PIGZQ86VD9 579 aa15.36■□□□□ 0.05
VRK3-206ENST00000594090 SHC3Q92529 594 aa15.36■□□□□ 0.05
VRK3-206ENST00000594090 BPIFA3Q9BQP9 254 aa15.36■□□□□ 0.05
VRK3-206ENST00000594090 ZSWIM1Q9BR11 485 aa15.36■□□□□ 0.05
VRK3-206ENST00000594090 UBXN6Q9BZV1 441 aa15.36■□□□□ 0.05
VRK3-206ENST00000594090 VPS16Q9H269 839 aa15.36■□□□□ 0.05
VRK3-206ENST00000594090 HSD3B7Q9H2F3 369 aa15.36■□□□□ 0.05
VRK3-206ENST00000594090 CHORDC1Q9UHD1 332 aaPredicted RBP15.36■□□□□ 0.05
VRK3-206ENST00000594090 ARHGAP26Q9UNA1 814 aa15.36■□□□□ 0.05
VRK3-206ENST00000594090 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.36■□□□□ 0.05
VRK3-206ENST00000594090 USP3Q9Y6I4 520 aa15.36■□□□□ 0.05
VRK3-206ENST00000594090 SYCE3A1L190 88 aa15.35■□□□□ 0.05
VRK3-206ENST00000594090 BECN2A8MW95 431 aa15.35■□□□□ 0.05
VRK3-206ENST00000594090 TULP2O00295 520 aa15.35■□□□□ 0.05
VRK3-206ENST00000594090 SETSIPP0DME0 302 aa15.35■□□□□ 0.05
VRK3-206ENST00000594090 PGFP49763 221 aa15.35■□□□□ 0.05
VRK3-206ENST00000594090 TUBP50607 506 aa15.35■□□□□ 0.05
VRK3-206ENST00000594090 SLC7A9P82251 487 aa15.35■□□□□ 0.05
VRK3-206ENST00000594090 PRKCQQ04759 706 aa15.35■□□□□ 0.05
VRK3-206ENST00000594090 STILQ15468 1287 aa15.35■□□□□ 0.05
VRK3-206ENST00000594090 PKDCCQ504Y2 493 aa15.35■□□□□ 0.05
VRK3-206ENST00000594090 SLC44A4Q53GD3 710 aa15.35■□□□□ 0.05
VRK3-206ENST00000594090 RAB41Q5JT25 222 aa15.35■□□□□ 0.05
VRK3-206ENST00000594090 CCDC186Q7Z3E2 898 aa15.35■□□□□ 0.05
VRK3-206ENST00000594090 ANKRD20A12PQ8NF67 263 aa15.35■□□□□ 0.05
VRK3-206ENST00000594090 UBA3Q8TBC4 463 aa15.35■□□□□ 0.05
VRK3-206ENST00000594090 ZFYVE19Q96K21 471 aa15.35■□□□□ 0.05
VRK3-206ENST00000594090 TBC1D17Q9HA65 648 aa15.35■□□□□ 0.05
VRK3-206ENST00000594090 TLR8Q9NR97 1041 aaKnown RBP15.35■□□□□ 0.05
VRK3-206ENST00000594090 HEBP1Q9NRV9 189 aa15.35■□□□□ 0.05
VRK3-206ENST00000594090 M0QYV0 167 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 COCHO43405 550 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 TCF3P15923 654 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 PLA2G4AP47712 749 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 COPB1P53618 953 aaKnown RBP15.34■□□□□ 0.05
VRK3-206ENST00000594090 VCPP55072 806 aaKnown RBP15.34■□□□□ 0.05
VRK3-206ENST00000594090 STARD6P59095 220 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 PLCB2Q00722 1185 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 MTF1Q14872 753 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 CNGA2Q16280 664 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 HECTD3Q5T447 861 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 ASTLQ6HA08 431 aaPredicted RBP15.34■□□□□ 0.05
VRK3-206ENST00000594090 TPRG1Q6ZUI0 275 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 DHX40Q8IX18 779 aaKnown RBP15.34■□□□□ 0.05
VRK3-206ENST00000594090 FLCNQ8NFG4 579 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 SH3RF2Q8TEC5 729 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 SHDQ96IW2 340 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 LSM14BQ9BX40 385 aaKnown RBP15.34■□□□□ 0.05
VRK3-206ENST00000594090 RNF38Q9H0F5 515 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 CCSER2Q9H7U1 834 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 THG1LQ9NWX6 298 aaKnown RBP15.34■□□□□ 0.05
VRK3-206ENST00000594090 LIMA1Q9UHB6 759 aaKnown RBP15.34■□□□□ 0.05
VRK3-206ENST00000594090 DNAJC12Q9UKB3 198 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 A0A1W2PQH9 124 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 TLR5O60602 858 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 RFX1P22670 979 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 GNA15P30679 374 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 ZNF165P49910 485 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 CLCN5P51795 746 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 ZXDBP98169 803 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 SKOR2Q2VWA4 1001 aaPredicted RBP15.34■□□□□ 0.05
VRK3-206ENST00000594090 FKBP15Q5T1M5 1219 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 KLHDC7AQ5VTJ3 777 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 SMYD5Q6GMV2 418 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 TTC16Q8NEE8 873 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 CSGALNACT1Q8TDX6 532 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 DDX23Q9BUQ8 820 aaKnown RBP15.34■□□□□ 0.05
VRK3-206ENST00000594090 NMUR1Q9HB89 426 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 OSER1Q9NX31 292 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 FHOD1Q9Y613 1164 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 CPQQ9Y646 472 aa15.34■□□□□ 0.05
VRK3-206ENST00000594090 LGALS16A8MUM7 142 aa15.33■□□□□ 0.04
VRK3-206ENST00000594090 STK25O00506 426 aa15.33■□□□□ 0.04
VRK3-206ENST00000594090 MBL2P11226 248 aaPredicted RBP15.33■□□□□ 0.04
VRK3-206ENST00000594090 UCHL3P15374 230 aa15.33■□□□□ 0.04
VRK3-206ENST00000594090 AOC1P19801 751 aa15.33■□□□□ 0.04
VRK3-206ENST00000594090 CDK11BP21127 795 aaKnown RBP15.33■□□□□ 0.04
VRK3-206ENST00000594090 USP8P40818 1118 aa15.33■□□□□ 0.04
VRK3-206ENST00000594090 TKTL1P51854 596 aa15.33■□□□□ 0.04
VRK3-206ENST00000594090 TNK2Q07912 1038 aa15.33■□□□□ 0.04
VRK3-206ENST00000594090 ADIGQ0VDE8 80 aa15.33■□□□□ 0.04
VRK3-206ENST00000594090 ZSCAN23Q3MJ62 389 aa15.33■□□□□ 0.04
VRK3-206ENST00000594090 CC2D1AQ6P1N0 951 aaPredicted RBP15.33■□□□□ 0.04
VRK3-206ENST00000594090 APTXQ7Z2E3 356 aaKnown RBP15.33■□□□□ 0.04
VRK3-206ENST00000594090 TMEM105Q8N8V8 129 aa15.33■□□□□ 0.04
VRK3-206ENST00000594090 SLC35F5Q8WV83 523 aa15.33■□□□□ 0.04
VRK3-206ENST00000594090 KCTD13Q8WZ19 329 aa15.33■□□□□ 0.04
VRK3-206ENST00000594090 SECISBP2LQ93073 1101 aaKnown RBP15.33■□□□□ 0.04
VRK3-206ENST00000594090 ZFRQ96KR1 1074 aaKnown RBP15.33■□□□□ 0.04
VRK3-206ENST00000594090 FAM83CQ9BQN1 747 aa15.33■□□□□ 0.04
VRK3-206ENST00000594090 FOXQ1Q9C009 403 aa15.33■□□□□ 0.04
VRK3-206ENST00000594090 LRRC4Q9HBW1 653 aa15.33■□□□□ 0.04
VRK3-206ENST00000594090 ACP6Q9NPH0 428 aa15.33■□□□□ 0.04
VRK3-206ENST00000594090 CYLDQ9NQC7 956 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms