RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 FAM126AQ9BYI3 521 aaPredicted RBP16.16■□□□□ 0.18
TRIM28-203ENST00000593582 CISHQ9NSE2 258 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 ZSCAN32Q9NX65 697 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 SMPD4Q9NXE4 827 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 COQ4Q9Y3A0 265 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 CPQQ9Y646 472 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 FRYLO94915 3013 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 CACNA1IQ9P0X4 2223 aa16.16■□□□□ 0.18
TRIM28-203ENST00000593582 WDR87Q6ZQQ6 2873 aa16.15■□□□□ 0.18
TRIM28-203ENST00000593582 FAM92AA1XBS5 289 aa16.15■□□□□ 0.18
TRIM28-203ENST00000593582 PPP1R3GB7ZBB8 358 aa16.15■□□□□ 0.18
TRIM28-203ENST00000593582 TRDMT1O14717 391 aaKnown RBP16.15■□□□□ 0.18
TRIM28-203ENST00000593582 NFATC1O95644 943 aa16.15■□□□□ 0.18
TRIM28-203ENST00000593582 MBL2P11226 248 aaPredicted RBP16.15■□□□□ 0.18
TRIM28-203ENST00000593582 GJA4P35212 333 aa16.15■□□□□ 0.18
TRIM28-203ENST00000593582 CXCL12P48061 93 aa16.15■□□□□ 0.18
TRIM28-203ENST00000593582 TUBP50607 506 aa16.15■□□□□ 0.18
TRIM28-203ENST00000593582 NRLP54845 237 aa16.15■□□□□ 0.18
TRIM28-203ENST00000593582 ZXDBP98169 803 aa16.15■□□□□ 0.18
TRIM28-203ENST00000593582 CCDC40Q4G0X9 1142 aa16.15■□□□□ 0.18
TRIM28-203ENST00000593582 ZNF394Q53GI3 561 aa16.15■□□□□ 0.18
TRIM28-203ENST00000593582 TMEM196Q5HYL7 178 aa16.15■□□□□ 0.18
TRIM28-203ENST00000593582 TTI2Q6NXR4 508 aa16.15■□□□□ 0.18
TRIM28-203ENST00000593582 FOXR2Q6PJQ5 311 aa16.15■□□□□ 0.18
TRIM28-203ENST00000593582 CLEC20AQ6ZU45 233 aa16.15■□□□□ 0.18
TRIM28-203ENST00000593582 DDX42Q86XP3 938 aaKnown RBP eCLIP16.15■□□□□ 0.18
TRIM28-203ENST00000593582 KIAA1958Q8N8K9 716 aa16.15■□□□□ 0.18
TRIM28-203ENST00000593582 HEXIM2Q96MH2 286 aaKnown RBP16.15■□□□□ 0.18
TRIM28-203ENST00000593582 LINC00597Q9H2U6 94 aa16.15■□□□□ 0.18
TRIM28-203ENST00000593582 GMIPQ9P107 970 aa16.15■□□□□ 0.18
TRIM28-203ENST00000593582 CTNND2Q9UQB3 1225 aa16.15■□□□□ 0.18
TRIM28-203ENST00000593582 ZNF638Q14966 1978 aaKnown RBP16.15■□□□□ 0.18
TRIM28-203ENST00000593582 SLC9A3R1O14745 358 aaPredicted RBP16.14■□□□□ 0.17
TRIM28-203ENST00000593582 COCHO43405 550 aa16.14■□□□□ 0.17
TRIM28-203ENST00000593582 ZDHHC11BP0C7U3 371 aa16.14■□□□□ 0.17
TRIM28-203ENST00000593582 PAK1Q13153 545 aa16.14■□□□□ 0.17
TRIM28-203ENST00000593582 GAS6Q14393 721 aa16.14■□□□□ 0.17
TRIM28-203ENST00000593582 Q6ZS52 159 aa16.14■□□□□ 0.17
TRIM28-203ENST00000593582 ZBTB44Q8NCP5 570 aa16.14■□□□□ 0.17
TRIM28-203ENST00000593582 TATDN2Q93075 761 aa16.14■□□□□ 0.17
TRIM28-203ENST00000593582 JAKMIP2Q96AA8 810 aa16.14■□□□□ 0.17
TRIM28-203ENST00000593582 CHFRQ96EP1 664 aa16.14■□□□□ 0.17
TRIM28-203ENST00000593582 TMEM176AQ96HP8 235 aa16.14■□□□□ 0.17
TRIM28-203ENST00000593582 ARID3AQ99856 593 aa16.14■□□□□ 0.17
TRIM28-203ENST00000593582 DUSP9Q99956 384 aaKnown RBP16.14■□□□□ 0.17
TRIM28-203ENST00000593582 P2RY13Q9BPV8 354 aa16.14■□□□□ 0.17
TRIM28-203ENST00000593582 NACA2Q9H009 215 aa16.14■□□□□ 0.17
TRIM28-203ENST00000593582 PNPLA8Q9NP80 782 aa16.14■□□□□ 0.17
TRIM28-203ENST00000593582 TLR8Q9NR97 1041 aaKnown RBP16.14■□□□□ 0.17
TRIM28-203ENST00000593582 CFAP97Q9P2B7 532 aa16.14■□□□□ 0.17
TRIM28-203ENST00000593582 PATJQ8NI35 1801 aa16.14■□□□□ 0.17
TRIM28-203ENST00000593582 KIF26AQ9ULI4 1882 aaPredicted RBP16.14■□□□□ 0.17
TRIM28-203ENST00000593582 ANAPC1Q9H1A4 1944 aa16.13■□□□□ 0.17
TRIM28-203ENST00000593582 GNA14O95837 355 aa16.13■□□□□ 0.17
TRIM28-203ENST00000593582 DRD1P21728 446 aa16.13■□□□□ 0.17
TRIM28-203ENST00000593582 FMO5P49326 533 aa16.13■□□□□ 0.17
TRIM28-203ENST00000593582 YWHAEP62258 255 aaKnown RBP16.13■□□□□ 0.17
TRIM28-203ENST00000593582 SATB1Q01826 763 aa16.13■□□□□ 0.17
TRIM28-203ENST00000593582 CETN1Q12798 172 aa16.13■□□□□ 0.17
TRIM28-203ENST00000593582 CUL2Q13617 745 aa16.13■□□□□ 0.17
TRIM28-203ENST00000593582 CAMK4Q16566 473 aa16.13■□□□□ 0.17
TRIM28-203ENST00000593582 PPP1R26Q5T8A7 1209 aaPredicted RBP16.13■□□□□ 0.17
TRIM28-203ENST00000593582 TRIML1Q8N9V2 468 aa16.13■□□□□ 0.17
TRIM28-203ENST00000593582 SLC4A11Q8NBS3 891 aa16.13■□□□□ 0.17
TRIM28-203ENST00000593582 NELL1Q92832 810 aa16.13■□□□□ 0.17
TRIM28-203ENST00000593582 DUSP16Q9BY84 665 aa16.13■□□□□ 0.17
TRIM28-203ENST00000593582 CCSER2Q9H7U1 834 aa16.13■□□□□ 0.17
TRIM28-203ENST00000593582 SCML2Q9UQR0 700 aa16.13■□□□□ 0.17
TRIM28-203ENST00000593582 TDGF1P13385 188 aa16.12■□□□□ 0.17
TRIM28-203ENST00000593582 ACO1P21399 889 aaKnown RBP16.12■□□□□ 0.17
TRIM28-203ENST00000593582 GALK1P51570 392 aa16.12■□□□□ 0.17
TRIM28-203ENST00000593582 RAD23BP54727 409 aa16.12■□□□□ 0.17
TRIM28-203ENST00000593582 SLC8A3P57103 927 aa16.12■□□□□ 0.17
TRIM28-203ENST00000593582 FSTL4Q6MZW2 842 aa16.12■□□□□ 0.17
TRIM28-203ENST00000593582 GPRIN1Q7Z2K8 1008 aa16.12■□□□□ 0.17
TRIM28-203ENST00000593582 CD101Q93033 1021 aa16.12■□□□□ 0.17
TRIM28-203ENST00000593582 KIAA1468Q9P260 1216 aa16.12■□□□□ 0.17
TRIM28-203ENST00000593582 TBC1D14Q9P2M4 693 aa16.12■□□□□ 0.17
TRIM28-203ENST00000593582 E2F8A0AVK6 867 aa16.11■□□□□ 0.17
TRIM28-203ENST00000593582 HHLA1C9JL84 531 aa16.11■□□□□ 0.17
TRIM28-203ENST00000593582 PMM2O15305 246 aa16.11■□□□□ 0.17
TRIM28-203ENST00000593582 CYP26A1O43174 497 aa16.11■□□□□ 0.17
TRIM28-203ENST00000593582 TLR5O60602 858 aa16.11■□□□□ 0.17
TRIM28-203ENST00000593582 ATG13O75143 517 aa16.11■□□□□ 0.17
TRIM28-203ENST00000593582 PAPSS2O95340 614 aaPredicted RBP16.11■□□□□ 0.17
TRIM28-203ENST00000593582 FGFR1OPO95684 399 aaKnown RBP16.11■□□□□ 0.17
TRIM28-203ENST00000593582 EGFP01133 1207 aa16.11■□□□□ 0.17
TRIM28-203ENST00000593582 TBXAS1P24557 533 aaPredicted RBP16.11■□□□□ 0.17
TRIM28-203ENST00000593582 STX17P56962 302 aa16.11■□□□□ 0.17
TRIM28-203ENST00000593582 LRMPQ12912 555 aa16.11■□□□□ 0.17
TRIM28-203ENST00000593582 ARHGAP17Q68EM7 881 aa16.11■□□□□ 0.17
TRIM28-203ENST00000593582 ADGRG2Q8IZP9 1017 aa16.11■□□□□ 0.17
TRIM28-203ENST00000593582 FBRSL1Q9HCM7 1045 aaKnown RBP16.11■□□□□ 0.17
TRIM28-203ENST00000593582 SH3BP1Q9Y3L3 701 aa16.11■□□□□ 0.17
TRIM28-203ENST00000593582 SCAMP3O14828 347 aaKnown RBP16.1■□□□□ 0.17
TRIM28-203ENST00000593582 P4HA2O15460 535 aa16.1■□□□□ 0.17
TRIM28-203ENST00000593582 ATP5C1P36542 298 aaKnown RBP16.1■□□□□ 0.17
TRIM28-203ENST00000593582 PGFP49763 221 aa16.1■□□□□ 0.17
TRIM28-203ENST00000593582 KIF11P52732 1056 aa16.1■□□□□ 0.17
TRIM28-203ENST00000593582 FBXO43Q4G163 708 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms