RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 CYTH3O43739 400 aa8.63□□□□□ -1.03
SMAD4-209ENST00000589941 RRP9O43818 475 aaKnown RBP8.63□□□□□ -1.03
SMAD4-209ENST00000589941 CCNE2O96020 404 aa8.63□□□□□ -1.03
SMAD4-209ENST00000589941 TPM2P07951 284 aa8.63□□□□□ -1.03
SMAD4-209ENST00000589941 CEACAM1P13688 526 aa8.63□□□□□ -1.03
SMAD4-209ENST00000589941 GLUD2P49448 558 aa8.63□□□□□ -1.03
SMAD4-209ENST00000589941 NLRP11P59045 1033 aaKnown RBP8.63□□□□□ -1.03
SMAD4-209ENST00000589941 RNASELQ05823 741 aaKnown RBP8.63□□□□□ -1.03
SMAD4-209ENST00000589941 CYP4F3Q08477 520 aa8.63□□□□□ -1.03
SMAD4-209ENST00000589941 SCAPQ12770 1279 aa8.63□□□□□ -1.03
SMAD4-209ENST00000589941 ITGB3BPQ13352 177 aaPredicted RBP8.63□□□□□ -1.03
SMAD4-209ENST00000589941 SLC5A9Q2M3M2 681 aa8.63□□□□□ -1.03
SMAD4-209ENST00000589941 ODR4Q5SWX8 454 aa8.63□□□□□ -1.03
SMAD4-209ENST00000589941 PKN3Q6P5Z2 889 aa8.63□□□□□ -1.03
SMAD4-209ENST00000589941 LILRA6Q6PI73 481 aa8.63□□□□□ -1.03
SMAD4-209ENST00000589941 NLRX1Q86UT6 975 aa8.63□□□□□ -1.03
SMAD4-209ENST00000589941 WDR5BQ86VZ2 330 aa8.63□□□□□ -1.03
SMAD4-209ENST00000589941 ZNF227Q86WZ6 799 aa8.63□□□□□ -1.03
SMAD4-209ENST00000589941 CCDC60Q8IWA6 550 aaPredicted RBP8.63□□□□□ -1.03
SMAD4-209ENST00000589941 GIMAP8Q8ND71 665 aaPredicted RBP8.63□□□□□ -1.03
SMAD4-209ENST00000589941 OTUD7AQ8TE49 926 aaPredicted RBP8.63□□□□□ -1.03
SMAD4-209ENST00000589941 PTCHD1Q96NR3 888 aa8.63□□□□□ -1.03
SMAD4-209ENST00000589941 TRIM55Q9BYV6 548 aa8.63□□□□□ -1.03
SMAD4-209ENST00000589941 AZI2Q9H6S1 392 aa8.63□□□□□ -1.03
SMAD4-209ENST00000589941 RXFP1Q9HBX9 757 aa8.63□□□□□ -1.03
SMAD4-209ENST00000589941 LMBRD1Q9NUN5 540 aa8.63□□□□□ -1.03
SMAD4-209ENST00000589941 SLC9A2Q9UBY0 812 aa8.63□□□□□ -1.03
SMAD4-209ENST00000589941 MRPS17Q9Y2R5 130 aaKnown RBP8.63□□□□□ -1.03
SMAD4-209ENST00000589941 ZFP37Q9Y6Q3 630 aaPredicted RBP8.63□□□□□ -1.03
SMAD4-209ENST00000589941 PCDH15Q96QU1 1955 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 ASXL3Q9C0F0 2248 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 COL1A2P08123 1366 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 PI4KAP42356 2102 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 A0A0D9SFI3 127 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 KLRF2D3W0D1 207 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 MEIS2O14770 477 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 NRP1O14786 923 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 OFD1O75665 1012 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 PAPSS2O95340 614 aaPredicted RBP8.62□□□□□ -1.03
SMAD4-209ENST00000589941 ZSCAN20P17040 1043 aaPredicted RBP8.62□□□□□ -1.03
SMAD4-209ENST00000589941 CNR2P34972 360 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 STAT5BP51692 787 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 MTMR1Q13613 665 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 ALX1Q15699 326 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 GTF2IRD2BQ6EKJ0 949 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 TANGO2Q6ICL3 276 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 PLPPR4Q7Z2D5 763 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 GTF2IRD2Q86UP8 949 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 ZNF589Q86UQ0 364 aaPredicted RBP8.62□□□□□ -1.03
SMAD4-209ENST00000589941 ZSCAN30Q86W11 494 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 DGKHQ86XP1 1220 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 LRRC71Q8N4P6 559 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 SAMD3Q8N6K7 520 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 METTL13Q8N6R0 699 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 LINC01465Q8N7H1 131 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 MDM1Q8TC05 714 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 BTN2A2Q8WVV5 523 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 GAB3Q8WWW8 586 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 PIBF1Q8WXW3 757 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 FAM3CQ92520 227 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 DNASE1L2Q92874 299 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 IER2Q9BTL4 223 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 LRRCC1Q9C099 1032 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 RAI2Q9Y5P3 530 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 BACE2Q9Y5Z0 518 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 UBIAD1Q9Y5Z9 338 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 PIAS3Q9Y6X2 628 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 HELZP42694 1942 aaKnown RBP8.62□□□□□ -1.03
SMAD4-209ENST00000589941 ANKRD17O75179 2603 aaKnown RBP8.62□□□□□ -1.03
SMAD4-209ENST00000589941 MGAQ8IWI9 3026 aa8.62□□□□□ -1.03
SMAD4-209ENST00000589941 ZMYM6O95789 1325 aa8.61□□□□□ -1.03
SMAD4-209ENST00000589941 SPTA1P02549 2419 aa8.61□□□□□ -1.03
SMAD4-209ENST00000589941 PATE3B3GLJ2 98 aa8.61□□□□□ -1.03
SMAD4-209ENST00000589941 CDX4O14627 284 aaPredicted RBP8.61□□□□□ -1.03
SMAD4-209ENST00000589941 ECI2O75521 394 aa8.61□□□□□ -1.03
SMAD4-209ENST00000589941 RPP40O75818 363 aaKnown RBP8.61□□□□□ -1.03
SMAD4-209ENST00000589941 DARSP14868 501 aaKnown RBP8.61□□□□□ -1.03
SMAD4-209ENST00000589941 CEBPBP17676 345 aa8.61□□□□□ -1.03
SMAD4-209ENST00000589941 CSRP1P21291 193 aaKnown RBP8.61□□□□□ -1.03
SMAD4-209ENST00000589941 FAM193AP78312 1265 aa8.61□□□□□ -1.03
SMAD4-209ENST00000589941 DSG1Q02413 1049 aa8.61□□□□□ -1.03
SMAD4-209ENST00000589941 CUL4AQ13619 759 aa8.61□□□□□ -1.03
SMAD4-209ENST00000589941 MLANAQ16655 118 aa8.61□□□□□ -1.03
SMAD4-209ENST00000589941 POMZP3Q6PJE2 187 aa8.61□□□□□ -1.03
SMAD4-209ENST00000589941 PRSS55Q6UWB4 352 aaPredicted RBP8.61□□□□□ -1.03
SMAD4-209ENST00000589941 GLB1LQ6UWU2 654 aa8.61□□□□□ -1.03
SMAD4-209ENST00000589941 MFSD6Q6ZSS7 791 aa8.61□□□□□ -1.03
SMAD4-209ENST00000589941 TRMT1LQ7Z2T5 733 aaKnown RBP8.61□□□□□ -1.03
SMAD4-209ENST00000589941 SPEM1Q8N4L4 309 aa8.61□□□□□ -1.03
SMAD4-209ENST00000589941 CHCHD4Q8N4Q1 142 aa8.61□□□□□ -1.03
SMAD4-209ENST00000589941 MCRS1Q96EZ8 462 aa8.61□□□□□ -1.03
SMAD4-209ENST00000589941 LOXL4Q96JB6 756 aa8.61□□□□□ -1.03
SMAD4-209ENST00000589941 PLEKHA4Q9H4M7 779 aa8.61□□□□□ -1.03
SMAD4-209ENST00000589941 VPS45Q9NRW7 570 aa8.61□□□□□ -1.03
SMAD4-209ENST00000589941 POLR3BQ9NW08 1133 aaPredicted RBP8.61□□□□□ -1.03
SMAD4-209ENST00000589941 FBXW11Q9UKB1 542 aa8.61□□□□□ -1.03
SMAD4-209ENST00000589941 IGKV6D-21A0A0A0MT36 114 aa8.6□□□□□ -1.03
SMAD4-209ENST00000589941 DDX39AO00148 427 aaKnown RBP8.6□□□□□ -1.03
SMAD4-209ENST00000589941 EXTL3O43909 919 aa8.6□□□□□ -1.03
SMAD4-209ENST00000589941 REC8O95072 547 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms