RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 NAGPAQ9UK23 515 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 ARHGAP26Q9UNA1 814 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 CPQQ9Y646 472 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 LEFTY2O00292 366 aa11.48□□□□□ -0.57
CLIP3-203ENST00000586457 BEST1O76090 585 aa11.48□□□□□ -0.57
CLIP3-203ENST00000586457 PAEPP09466 180 aa11.48□□□□□ -0.57
CLIP3-203ENST00000586457 SLC7A9P82251 487 aa11.48□□□□□ -0.57
CLIP3-203ENST00000586457 TNK2Q07912 1038 aa11.48□□□□□ -0.57
CLIP3-203ENST00000586457 STILQ15468 1287 aa11.48□□□□□ -0.57
CLIP3-203ENST00000586457 GOLGA7BQ2TAP0 167 aa11.48□□□□□ -0.57
CLIP3-203ENST00000586457 DGKKQ5KSL6 1271 aa11.48□□□□□ -0.57
CLIP3-203ENST00000586457 ARHGAP17Q68EM7 881 aa11.48□□□□□ -0.57
CLIP3-203ENST00000586457 TRIM68Q6AZZ1 485 aa11.48□□□□□ -0.57
CLIP3-203ENST00000586457 ZC3H14Q6PJT7 736 aaKnown RBP11.48□□□□□ -0.57
CLIP3-203ENST00000586457 RSRC2Q7L4I2 434 aaKnown RBP11.48□□□□□ -0.57
CLIP3-203ENST00000586457 SIX6OS1Q8N1H7 587 aa11.48□□□□□ -0.57
CLIP3-203ENST00000586457 ANKRD52Q8NB46 1076 aa11.48□□□□□ -0.57
CLIP3-203ENST00000586457 PRSS33Q8NF86 280 aa11.48□□□□□ -0.57
CLIP3-203ENST00000586457 GOLGA1Q92805 767 aa11.48□□□□□ -0.57
CLIP3-203ENST00000586457 LRRC3BQ96PB8 259 aa11.48□□□□□ -0.57
CLIP3-203ENST00000586457 DDX23Q9BUQ8 820 aaKnown RBP11.48□□□□□ -0.57
CLIP3-203ENST00000586457 UBXN6Q9BZV1 441 aa11.48□□□□□ -0.57
CLIP3-203ENST00000586457 RNF38Q9H0F5 515 aa11.48□□□□□ -0.57
CLIP3-203ENST00000586457 INTS2Q9H0H0 1204 aaKnown RBP11.48□□□□□ -0.57
CLIP3-203ENST00000586457 GMIPQ9P107 970 aa11.48□□□□□ -0.57
CLIP3-203ENST00000586457 CFAP97Q9P2B7 532 aa11.48□□□□□ -0.57
CLIP3-203ENST00000586457 TBC1D14Q9P2M4 693 aa11.48□□□□□ -0.57
CLIP3-203ENST00000586457 LSM7Q9UK45 103 aaKnown RBP11.48□□□□□ -0.57
CLIP3-203ENST00000586457 SCML2Q9UQR0 700 aa11.48□□□□□ -0.57
CLIP3-203ENST00000586457 MTF2Q9Y483 593 aaPredicted RBP11.48□□□□□ -0.57
CLIP3-203ENST00000586457 WNT6Q9Y6F9 365 aa11.48□□□□□ -0.57
CLIP3-203ENST00000586457 ZNF638Q14966 1978 aaKnown RBP11.47□□□□□ -0.57
CLIP3-203ENST00000586457 NCANO14594 1321 aa11.47□□□□□ -0.57
CLIP3-203ENST00000586457 TNFRSF10BO14763 440 aa11.47□□□□□ -0.57
CLIP3-203ENST00000586457 MED7O43513 233 aa11.47□□□□□ -0.57
CLIP3-203ENST00000586457 TLR5O60602 858 aa11.47□□□□□ -0.57
CLIP3-203ENST00000586457 TADA3O75528 432 aa11.47□□□□□ -0.57
CLIP3-203ENST00000586457 TARSP26639 723 aaKnown RBP11.47□□□□□ -0.57
CLIP3-203ENST00000586457 RPS9P46781 194 aaKnown RBP11.47□□□□□ -0.57
CLIP3-203ENST00000586457 SOX9P48436 509 aa11.47□□□□□ -0.57
CLIP3-203ENST00000586457 TUBP50607 506 aa11.47□□□□□ -0.57
CLIP3-203ENST00000586457 BCAT1P54687 386 aa11.47□□□□□ -0.57
CLIP3-203ENST00000586457 NHLH1Q02575 133 aa11.47□□□□□ -0.57
CLIP3-203ENST00000586457 GCNT1Q02742 428 aa11.47□□□□□ -0.57
CLIP3-203ENST00000586457 PON2Q15165 354 aa11.47□□□□□ -0.57
CLIP3-203ENST00000586457 EXOC3L4Q17RC7 722 aa11.47□□□□□ -0.57
CLIP3-203ENST00000586457 DPCR1Q3MIW9 517 aa11.47□□□□□ -0.57
CLIP3-203ENST00000586457 HSP90AA4PQ58FG1 418 aa11.47□□□□□ -0.57
CLIP3-203ENST00000586457 C10orf120Q5SQS8 335 aa11.47□□□□□ -0.57
CLIP3-203ENST00000586457 BTBD8Q5XKL5 378 aa11.47□□□□□ -0.57
CLIP3-203ENST00000586457 NUDT18Q6ZVK8 323 aa11.47□□□□□ -0.57
CLIP3-203ENST00000586457 CCDC26Q8TAB7 109 aa11.47□□□□□ -0.57
CLIP3-203ENST00000586457 FAM83CQ9BQN1 747 aa11.47□□□□□ -0.57
CLIP3-203ENST00000586457 CRACR2AQ9BSW2 395 aa11.47□□□□□ -0.57
CLIP3-203ENST00000586457 NAT10Q9H0A0 1025 aaKnown RBP11.47□□□□□ -0.57
CLIP3-203ENST00000586457 ECT2Q9H8V3 914 aa11.47□□□□□ -0.57
CLIP3-203ENST00000586457 TMEM30AQ9NV96 361 aa11.47□□□□□ -0.57
CLIP3-203ENST00000586457 ANO10Q9NW15 660 aa11.47□□□□□ -0.57
CLIP3-203ENST00000586457 TSPAN16Q9UKR8 245 aa11.47□□□□□ -0.57
CLIP3-203ENST00000586457 E2F8A0AVK6 867 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 KCNJ18B7U540 433 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 ARNTLO00327 626 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 CYP26A1O43174 497 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 COCHO43405 550 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 ATG13O75143 517 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 ADH1CP00326 375 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 OAS1P00973 400 aaKnown RBP11.46□□□□□ -0.57
CLIP3-203ENST00000586457 SETSIPP0DME0 302 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 IRF1P10914 325 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 RARGP13631 454 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 ARSAP15289 507 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 CDK11BP21127 795 aaKnown RBP11.46□□□□□ -0.57
CLIP3-203ENST00000586457 CTHP32929 405 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 PLA2G4AP47712 749 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 TKTL1P51854 596 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 KIF11P52732 1056 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 NRLP54845 237 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 CSTF1Q05048 431 aaKnown RBP11.46□□□□□ -0.57
CLIP3-203ENST00000586457 BST2Q10589 180 aaKnown RBP11.46□□□□□ -0.57
CLIP3-203ENST00000586457 TCF15Q12870 199 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 KCNJ12Q14500 433 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 ZNF77Q15935 545 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 MAN2A1Q16706 1144 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 ARHGAP44Q17R89 818 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 PREPLQ4J6C6 727 aaPredicted RBP11.46□□□□□ -0.57
CLIP3-203ENST00000586457 VWA3BQ502W6 1294 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 CCDC183Q5T5S1 534 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 SNX30Q5VWJ9 437 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 PIGZQ86VD9 579 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 SYNPOQ8N3V7 929 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 RBBP8NLQ8NC74 664 aaPredicted RBP11.46□□□□□ -0.57
CLIP3-203ENST00000586457 ZMIZ2Q8NF64 920 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 UBA3Q8TBC4 463 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 GPT2Q8TD30 523 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 RNF139Q8WU17 664 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 ATRIPQ8WXE1 791 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 P2RY13Q9BPV8 354 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 TUBGCP2Q9BSJ2 902 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 IER2Q9BTL4 223 aa11.46□□□□□ -0.57
CLIP3-203ENST00000586457 CCSER2Q9H7U1 834 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms