RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 DAOAP59103 153 aa16.96■□□□□ 0.31
SS18-211ENST00000578954 RTL10Q7L3V2 364 aa16.96■□□□□ 0.31
SS18-211ENST00000578954 SCUBE3Q8IX30 993 aa16.96■□□□□ 0.31
SS18-211ENST00000578954 NUP93Q8N1F7 819 aa16.96■□□□□ 0.31
SS18-211ENST00000578954 LRRC57Q8N9N7 239 aa16.96■□□□□ 0.31
SS18-211ENST00000578954 ARNTL2Q8WYA1 636 aa16.96■□□□□ 0.31
SS18-211ENST00000578954 SEPT5Q99719 369 aaPredicted RBP16.96■□□□□ 0.31
SS18-211ENST00000578954 TTLL2Q9BWV7 592 aa16.96■□□□□ 0.31
SS18-211ENST00000578954 ULBP1Q9BZM6 244 aa16.96■□□□□ 0.31
SS18-211ENST00000578954 METTL5Q9NRN9 209 aaKnown RBP16.96■□□□□ 0.31
SS18-211ENST00000578954 PLXNA3P51805 1871 aa16.96■□□□□ 0.31
SS18-211ENST00000578954 CHD7Q9P2D1 2997 aa16.96■□□□□ 0.31
SS18-211ENST00000578954 GREB1Q4ZG55 1949 aa16.96■□□□□ 0.3
SS18-211ENST00000578954 TMEM265A0A087WTH1 108 aa16.95■□□□□ 0.3
SS18-211ENST00000578954 GRID2IPA4D2P6 1211 aa16.95■□□□□ 0.3
SS18-211ENST00000578954 GOLGA8SH3BPF8 625 aa16.95■□□□□ 0.3
SS18-211ENST00000578954 PIK3R2O00459 728 aa16.95■□□□□ 0.3
SS18-211ENST00000578954 BUB1O43683 1085 aa16.95■□□□□ 0.3
SS18-211ENST00000578954 KIF5CO60282 957 aa16.95■□□□□ 0.3
SS18-211ENST00000578954 RTN3O95197 1032 aaPredicted RBP16.95■□□□□ 0.3
SS18-211ENST00000578954 ZBED1O96006 694 aa16.95■□□□□ 0.3
SS18-211ENST00000578954 GLUD1P00367 558 aa16.95■□□□□ 0.3
SS18-211ENST00000578954 TUBB4AP04350 444 aa16.95■□□□□ 0.3
SS18-211ENST00000578954 NOP2P46087 812 aaKnown RBP16.95■□□□□ 0.3
SS18-211ENST00000578954 EFHC1Q5JVL4 640 aa16.95■□□□□ 0.3
SS18-211ENST00000578954 FAM102AQ5T9C2 384 aaPredicted RBP16.95■□□□□ 0.3
SS18-211ENST00000578954 C11orf63Q6NUN7 778 aa16.95■□□□□ 0.3
SS18-211ENST00000578954 DENND5BQ6ZUT9 1274 aa16.95■□□□□ 0.3
SS18-211ENST00000578954 BEND5Q7L4P6 421 aa16.95■□□□□ 0.3
SS18-211ENST00000578954 SLFN11Q7Z7L1 901 aa16.95■□□□□ 0.3
SS18-211ENST00000578954 PHLDB2Q86SQ0 1253 aa16.95■□□□□ 0.3
SS18-211ENST00000578954 TRIM58Q8NG06 486 aa16.95■□□□□ 0.3
SS18-211ENST00000578954 CLEC4CQ8WTT0 213 aa16.95■□□□□ 0.3
SS18-211ENST00000578954 IRX2Q9BZI1 471 aaPredicted RBP16.95■□□□□ 0.3
SS18-211ENST00000578954 FBXO44Q9H4M3 255 aa16.95■□□□□ 0.3
SS18-211ENST00000578954 CERS4Q9HA82 394 aa16.95■□□□□ 0.3
SS18-211ENST00000578954 CYP4F11Q9HBI6 524 aa16.95■□□□□ 0.3
SS18-211ENST00000578954 INSL5Q9Y5Q6 135 aa16.95■□□□□ 0.3
SS18-211ENST00000578954 MYO7AQ13402 2215 aa16.94■□□□□ 0.3
SS18-211ENST00000578954 C2CD4BA6NLJ0 364 aa16.94■□□□□ 0.3
SS18-211ENST00000578954 DPYSL4O14531 572 aa16.94■□□□□ 0.3
SS18-211ENST00000578954 BUB1BO60566 1050 aaPredicted RBP16.94■□□□□ 0.3
SS18-211ENST00000578954 HSF2BPO75031 334 aa16.94■□□□□ 0.3
SS18-211ENST00000578954 CLASP2O75122 1294 aaKnown RBP16.94■□□□□ 0.3
SS18-211ENST00000578954 SOAT2O75908 522 aa16.94■□□□□ 0.3
SS18-211ENST00000578954 GJB6O95452 261 aa16.94■□□□□ 0.3
SS18-211ENST00000578954 KLRC2P26717 231 aa16.94■□□□□ 0.3
SS18-211ENST00000578954 ELF1P32519 619 aa16.94■□□□□ 0.3
SS18-211ENST00000578954 CA8P35219 290 aa16.94■□□□□ 0.3
SS18-211ENST00000578954 RPL7AP62424 266 aaKnown RBP16.94■□□□□ 0.3
SS18-211ENST00000578954 ETF1P62495 437 aaKnown RBP16.94■□□□□ 0.3
SS18-211ENST00000578954 PLD1Q13393 1074 aa16.94■□□□□ 0.3
SS18-211ENST00000578954 SDHAF4Q5VUM1 108 aa16.94■□□□□ 0.3
SS18-211ENST00000578954 CCDC149Q6ZUS6 474 aa16.94■□□□□ 0.3
SS18-211ENST00000578954 JOSD2Q8TAC2 188 aa16.94■□□□□ 0.3
SS18-211ENST00000578954 SCAMP5Q8TAC9 235 aa16.94■□□□□ 0.3
SS18-211ENST00000578954 MICAL1Q8TDZ2 1067 aa16.94■□□□□ 0.3
SS18-211ENST00000578954 GDPD5Q8WTR4 605 aa16.94■□□□□ 0.3
SS18-211ENST00000578954 SLC22A17Q8WUG5 538 aa16.94■□□□□ 0.3
SS18-211ENST00000578954 HDAC7Q8WUI4 952 aa16.94■□□□□ 0.3
SS18-211ENST00000578954 UBE2Q2Q8WVN8 375 aa16.94■□□□□ 0.3
SS18-211ENST00000578954 MCEEQ96PE7 176 aa16.94■□□□□ 0.3
SS18-211ENST00000578954 ALS2CR12Q96Q35 445 aa16.94■□□□□ 0.3
SS18-211ENST00000578954 SLC2A13Q96QE2 648 aa16.94■□□□□ 0.3
SS18-211ENST00000578954 ANAPC7Q9UJX3 599 aa16.94■□□□□ 0.3
SS18-211ENST00000578954 SCML2Q9UQR0 700 aa16.94■□□□□ 0.3
SS18-211ENST00000578954 MTCL1Q9Y4B5 1905 aaKnown RBP16.94■□□□□ 0.3
SS18-211ENST00000578954 SLC38A8A6NNN8 435 aa16.93■□□□□ 0.3
SS18-211ENST00000578954 KIF2AO00139 706 aaPredicted RBP16.93■□□□□ 0.3
SS18-211ENST00000578954 PRRG1O14668 218 aa16.93■□□□□ 0.3
SS18-211ENST00000578954 DAB1O75553 588 aa16.93■□□□□ 0.3
SS18-211ENST00000578954 USP17L7P0C7H9 530 aa16.93■□□□□ 0.3
SS18-211ENST00000578954 MAN1A1P33908 653 aa16.93■□□□□ 0.3
SS18-211ENST00000578954 RFC1P35251 1148 aaPredicted RBP16.93■□□□□ 0.3
SS18-211ENST00000578954 OGDHQ02218 1023 aa16.93■□□□□ 0.3
SS18-211ENST00000578954 ZNF252P-AS1Q0IIN9 211 aa16.93■□□□□ 0.3
SS18-211ENST00000578954 TAF5Q15542 800 aa16.93■□□□□ 0.3
SS18-211ENST00000578954 TRNP1Q6NT89 227 aa16.93■□□□□ 0.3
SS18-211ENST00000578954 DCUN1D2Q6PH85 259 aa16.93■□□□□ 0.3
SS18-211ENST00000578954 NIPA2Q8N8Q9 360 aa16.93■□□□□ 0.3
SS18-211ENST00000578954 KREMEN2Q8NCW0 462 aa16.93■□□□□ 0.3
SS18-211ENST00000578954 MRPL38Q96DV4 380 aaKnown RBP16.93■□□□□ 0.3
SS18-211ENST00000578954 MYRFLQ96LU7 910 aa16.93■□□□□ 0.3
SS18-211ENST00000578954 TRIM7Q9C029 511 aa16.93■□□□□ 0.3
SS18-211ENST00000578954 PLEKHA4Q9H4M7 779 aa16.93■□□□□ 0.3
SS18-211ENST00000578954 EHD2Q9NZN4 543 aa16.93■□□□□ 0.3
SS18-211ENST00000578954 IP6K2Q9UHH9 426 aa16.93■□□□□ 0.3
SS18-211ENST00000578954 YJEFN3A6XGL0 299 aa16.92■□□□□ 0.3
SS18-211ENST00000578954 E7ENQ6 273 aa16.92■□□□□ 0.3
SS18-211ENST00000578954 MYO1FO00160 1098 aa16.92■□□□□ 0.3
SS18-211ENST00000578954 PALMO75781 387 aa16.92■□□□□ 0.3
SS18-211ENST00000578954 PROSCO94903 275 aa16.92■□□□□ 0.3
SS18-211ENST00000578954 PAPLNO95428 1278 aa16.92■□□□□ 0.3
SS18-211ENST00000578954 CSH1P0DML2 217 aa16.92■□□□□ 0.3
SS18-211ENST00000578954 CSH2P0DML3 217 aa16.92■□□□□ 0.3
SS18-211ENST00000578954 HMGA1P17096 107 aaKnown RBP16.92■□□□□ 0.3
SS18-211ENST00000578954 FLT3P36888 993 aa16.92■□□□□ 0.3
SS18-211ENST00000578954 ALDH1A3P47895 512 aa16.92■□□□□ 0.3
SS18-211ENST00000578954 ZNF143P52747 638 aaPredicted RBP16.92■□□□□ 0.3
SS18-211ENST00000578954 NAP1L1P55209 391 aaKnown RBP16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms