RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 LNP1A1A4G5 178 aa22.38■■□□□ 1.17
VPS53-216ENST00000574029 C4orf47A7E2U8 309 aa22.38■■□□□ 1.17
VPS53-216ENST00000574029 COCHO43405 550 aa22.38■■□□□ 1.17
VPS53-216ENST00000574029 ADH1CP00326 375 aa22.38■■□□□ 1.17
VPS53-216ENST00000574029 APODP05090 189 aa22.38■■□□□ 1.17
VPS53-216ENST00000574029 CASP4P49662 377 aa22.38■■□□□ 1.17
VPS53-216ENST00000574029 SNX30Q5VWJ9 437 aa22.38■■□□□ 1.17
VPS53-216ENST00000574029 PAQR9Q6ZVX9 377 aa22.38■■□□□ 1.17
VPS53-216ENST00000574029 ABCA7Q8IZY2 2146 aa22.38■■□□□ 1.17
VPS53-216ENST00000574029 ALLCQ8N6M5 410 aa22.38■■□□□ 1.17
VPS53-216ENST00000574029 TXNDC5Q8NBS9 432 aaKnown RBP22.38■■□□□ 1.17
VPS53-216ENST00000574029 PLEKHO2Q8TD55 490 aa22.38■■□□□ 1.17
VPS53-216ENST00000574029 FBXO32Q969P5 355 aa22.38■■□□□ 1.17
VPS53-216ENST00000574029 ZFRQ96KR1 1074 aaKnown RBP22.38■■□□□ 1.17
VPS53-216ENST00000574029 SMYD3Q9H7B4 428 aa22.38■■□□□ 1.17
VPS53-216ENST00000574029 IL37Q9NZH6 218 aa22.38■■□□□ 1.17
VPS53-216ENST00000574029 SGK1O00141 431 aa22.37■■□□□ 1.17
VPS53-216ENST00000574029 TNFRSF10BO14763 440 aa22.37■■□□□ 1.17
VPS53-216ENST00000574029 EXOC3O60645 756 aa22.37■■□□□ 1.17
VPS53-216ENST00000574029 PHACTR2O75167 634 aa22.37■■□□□ 1.17
VPS53-216ENST00000574029 ALDH1A2O94788 518 aa22.37■■□□□ 1.17
VPS53-216ENST00000574029 ADH5P11766 374 aa22.37■■□□□ 1.17
VPS53-216ENST00000574029 GRIA2P42262 883 aa22.37■■□□□ 1.17
VPS53-216ENST00000574029 KIR2DL1P43626 348 aaPredicted RBP22.37■■□□□ 1.17
VPS53-216ENST00000574029 AP3M2P53677 418 aa22.37■■□□□ 1.17
VPS53-216ENST00000574029 CDH8P55286 799 aa22.37■■□□□ 1.17
VPS53-216ENST00000574029 CLDN10P78369 228 aa22.37■■□□□ 1.17
VPS53-216ENST00000574029 FAM35AQ86V20 835 aa22.37■■□□□ 1.17
VPS53-216ENST00000574029 PHTF2Q8N3S3 785 aa22.37■■□□□ 1.17
VPS53-216ENST00000574029 OTUB2Q96DC9 234 aa22.37■■□□□ 1.17
VPS53-216ENST00000574029 CHORDC1Q9UHD1 332 aaPredicted RBP22.37■■□□□ 1.17
VPS53-216ENST00000574029 TNRC6BQ9UPQ9 1833 aaKnown RBP22.36■■□□□ 1.17
VPS53-216ENST00000574029 ATP8B3O60423 1300 aa22.36■■□□□ 1.17
VPS53-216ENST00000574029 PLXND1Q9Y4D7 1925 aa22.36■■□□□ 1.17
VPS53-216ENST00000574029 PALM2-AKAP2B1ALY0 433 aaPredicted RBP22.36■■□□□ 1.17
VPS53-216ENST00000574029 KHNYNO15037 678 aaKnown RBP22.36■■□□□ 1.17
VPS53-216ENST00000574029 KLF8O95600 359 aaPredicted RBP22.36■■□□□ 1.17
VPS53-216ENST00000574029 TIE1P35590 1138 aa22.36■■□□□ 1.17
VPS53-216ENST00000574029 TNFRSF4P43489 277 aa22.36■■□□□ 1.17
VPS53-216ENST00000574029 TUBP50607 506 aa22.36■■□□□ 1.17
VPS53-216ENST00000574029 CUL4BQ13620 913 aa22.36■■□□□ 1.17
VPS53-216ENST00000574029 EOGTQ5NDL2 527 aa22.36■■□□□ 1.17
VPS53-216ENST00000574029 LY6G5CQ5SRR4 150 aa22.36■■□□□ 1.17
VPS53-216ENST00000574029 HECTD3Q5T447 861 aa22.36■■□□□ 1.17
VPS53-216ENST00000574029 EMC10Q5UCC4 262 aa22.36■■□□□ 1.17
VPS53-216ENST00000574029 PSAPL1Q6NUJ1 521 aa22.36■■□□□ 1.17
VPS53-216ENST00000574029 CYP2U1Q7Z449 544 aa22.36■■□□□ 1.17
VPS53-216ENST00000574029 SCAMP5Q8TAC9 235 aa22.36■■□□□ 1.17
VPS53-216ENST00000574029 PARD3BQ8TEW8 1205 aa22.36■■□□□ 1.17
VPS53-216ENST00000574029 DUSP9Q99956 384 aaKnown RBP22.36■■□□□ 1.17
VPS53-216ENST00000574029 DMAP1Q9NPF5 467 aaPredicted RBP22.36■■□□□ 1.17
VPS53-216ENST00000574029 ARHGEF4Q9NR80 690 aa22.36■■□□□ 1.17
VPS53-216ENST00000574029 COMMD8Q9NX08 183 aa22.36■■□□□ 1.17
VPS53-216ENST00000574029 MAP1BP46821 2468 aaKnown RBP22.35■■□□□ 1.17
VPS53-216ENST00000574029 FAM92AA1XBS5 289 aa22.35■■□□□ 1.17
VPS53-216ENST00000574029 LRRIQ3A6PVS8 624 aaPredicted RBP22.35■■□□□ 1.17
VPS53-216ENST00000574029 C4BPAP04003 597 aaKnown RBP22.35■■□□□ 1.17
VPS53-216ENST00000574029 ZDHHC11BP0C7U3 371 aa22.35■■□□□ 1.17
VPS53-216ENST00000574029 P2RY2P41231 377 aa22.35■■□□□ 1.17
VPS53-216ENST00000574029 SLC5A3P53794 718 aa22.35■■□□□ 1.17
VPS53-216ENST00000574029 GAD2Q05329 585 aa22.35■■□□□ 1.17
VPS53-216ENST00000574029 BIRC3Q13489 604 aa22.35■■□□□ 1.17
VPS53-216ENST00000574029 ZNF699Q32M78 642 aa22.35■■□□□ 1.17
VPS53-216ENST00000574029 ZNF667Q5HYK9 610 aa22.35■■□□□ 1.17
VPS53-216ENST00000574029 DAB2IPQ5VWQ8 1189 aa22.35■■□□□ 1.17
VPS53-216ENST00000574029 TTC30AQ86WT1 665 aa22.35■■□□□ 1.17
VPS53-216ENST00000574029 GOLGA5Q8TBA6 731 aa22.35■■□□□ 1.17
VPS53-216ENST00000574029 WHAMMQ8TF30 809 aa22.35■■□□□ 1.17
VPS53-216ENST00000574029 SMARCD1Q96GM5 515 aa22.35■■□□□ 1.17
VPS53-216ENST00000574029 TNIP3Q96KP6 325 aa22.35■■□□□ 1.17
VPS53-216ENST00000574029 SDCBP2Q9H190 292 aa22.35■■□□□ 1.17
VPS53-216ENST00000574029 POLMQ9NP87 494 aaPredicted RBP22.35■■□□□ 1.17
VPS53-216ENST00000574029 CNOT1A5YKK6 2376 aaKnown RBP22.35■■□□□ 1.17
VPS53-216ENST00000574029 PATE3B3GLJ2 98 aa22.34■■□□□ 1.17
VPS53-216ENST00000574029 ADAM23O75077 832 aa22.34■■□□□ 1.17
VPS53-216ENST00000574029 VNN1O95497 513 aa22.34■■□□□ 1.17
VPS53-216ENST00000574029 AFMP43652 599 aa22.34■■□□□ 1.17
VPS53-216ENST00000574029 DHPSP49366 369 aaPredicted RBP22.34■■□□□ 1.17
VPS53-216ENST00000574029 KDSRQ06136 332 aa22.34■■□□□ 1.17
VPS53-216ENST00000574029 NCOA4Q13772 614 aa22.34■■□□□ 1.17
VPS53-216ENST00000574029 RESP18Q5W5W9 173 aa22.34■■□□□ 1.17
VPS53-216ENST00000574029 ETFBKMTQ8IXQ9 262 aa22.34■■□□□ 1.17
VPS53-216ENST00000574029 FUKQ8N0W3 1084 aa22.34■■□□□ 1.17
VPS53-216ENST00000574029 TMEM174Q8WUU8 243 aa22.34■■□□□ 1.17
VPS53-216ENST00000574029 MED10Q9BTT4 135 aa22.34■■□□□ 1.17
VPS53-216ENST00000574029 CCSER2Q9H7U1 834 aa22.34■■□□□ 1.17
VPS53-216ENST00000574029 FAM13BQ9NYF5 915 aa22.34■■□□□ 1.17
VPS53-216ENST00000574029 PCDHA7Q9UN72 937 aa22.34■■□□□ 1.17
VPS53-216ENST00000574029 SH3BP1Q9Y3L3 701 aa22.34■■□□□ 1.17
VPS53-216ENST00000574029 CDX4O14627 284 aaPredicted RBP22.33■■□□□ 1.17
VPS53-216ENST00000574029 HOXC11O43248 304 aaPredicted RBP22.33■■□□□ 1.17
VPS53-216ENST00000574029 NOVA1P51513 510 aaKnown RBP22.33■■□□□ 1.17
VPS53-216ENST00000574029 KCNV2Q8TDN2 545 aa22.33■■□□□ 1.17
VPS53-216ENST00000574029 RLN3Q8WXF3 142 aa22.33■■□□□ 1.17
VPS53-216ENST00000574029 ELMO3Q96BJ8 720 aa22.33■■□□□ 1.17
VPS53-216ENST00000574029 TMEM9BQ9NQ34 198 aa22.33■■□□□ 1.17
VPS53-216ENST00000574029 DMAC2Q9NW81 257 aa22.33■■□□□ 1.17
VPS53-216ENST00000574029 GMIPQ9P107 970 aa22.33■■□□□ 1.17
VPS53-216ENST00000574029 EVLQ9UI08 416 aaPredicted RBP22.33■■□□□ 1.17
VPS53-216ENST00000574029 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms