RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 NT5C1AQ9BXI3 368 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 SLC46A2Q9BY10 475 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 OSBPL6Q9BZF3 934 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 FOXQ1Q9C009 403 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 ZNF518BQ9C0D4 1074 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 SMG9Q9H0W8 520 aaKnown RBP8.6□□□□□ -1.03
VPS53-214ENST00000572607 C8orf33Q9H7E9 229 aaPredicted RBP8.6□□□□□ -1.03
VPS53-214ENST00000572607 LTB4R2Q9NPC1 389 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 DMAP1Q9NPF5 467 aaPredicted RBP8.6□□□□□ -1.03
VPS53-214ENST00000572607 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.6□□□□□ -1.03
VPS53-214ENST00000572607 RAB20Q9NX57 234 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 PIAS3Q9Y6X2 628 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 CACNA1IQ9P0X4 2223 aa8.6□□□□□ -1.03
VPS53-214ENST00000572607 COL4A3Q01955 1670 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 PATJQ8NI35 1801 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 EPG5Q9HCE0 2579 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 TRIM49BA6NDI0 452 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 AP1G2O75843 785 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 GNA14O95837 355 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 ABL1P00519 1130 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 DCNP07585 359 aaKnown RBP8.59□□□□□ -1.03
VPS53-214ENST00000572607 FAM200BP0CF97 657 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 PFKLP17858 780 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 CD58P19256 250 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 YWHAQP27348 245 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 ASPAP45381 313 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 ID4P47928 161 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 YWHAEP62258 255 aaKnown RBP8.59□□□□□ -1.03
VPS53-214ENST00000572607 AMPD2Q01433 879 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 INCA1Q0VD86 236 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 PAK1Q13153 545 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 MORC3Q14149 939 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 LRRC32Q14392 662 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 ZNF268Q14587 947 aaPredicted RBP8.59□□□□□ -1.03
VPS53-214ENST00000572607 ANGPT1Q15389 498 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 TMEM150AQ86TG1 271 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 NUP93Q8N1F7 819 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 CRYBG2Q8N1P7 616 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 TTC16Q8NEE8 873 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 SNIP1Q8TAD8 396 aaKnown RBP8.59□□□□□ -1.03
VPS53-214ENST00000572607 SLC2A14Q8TDB8 520 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 FAM3CQ92520 227 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 FBXO32Q969P5 355 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 ELMO3Q96BJ8 720 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 RMDN1Q96DB5 314 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 FAXDC2Q96IV6 333 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 DDX23Q9BUQ8 820 aaKnown RBP8.59□□□□□ -1.03
VPS53-214ENST00000572607 B3GNT5Q9BYG0 378 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 SDCBP2Q9H190 292 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 KRT82Q9NSB4 513 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 TDP1Q9NUW8 608 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 GMPR2Q9P2T1 348 aaKnown RBP8.59□□□□□ -1.03
VPS53-214ENST00000572607 NDRG2Q9UN36 371 aaKnown RBP8.59□□□□□ -1.03
VPS53-214ENST00000572607 CTNND2Q9UQB3 1225 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 NME7Q9Y5B8 376 aa8.59□□□□□ -1.03
VPS53-214ENST00000572607 GPR179Q6PRD1 2367 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 CLDN5O00501 218 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 LAMTOR5O43504 91 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 TADA3O75528 432 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 CCDC130P13994 396 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 HDCP19113 662 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 CD72P21854 359 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 TARSP26639 723 aaKnown RBP8.58□□□□□ -1.04
VPS53-214ENST00000572607 ADORA2BP29275 332 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 IFNAR2P48551 515 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 PMS1P54277 932 aaKnown RBP8.58□□□□□ -1.04
VPS53-214ENST00000572607 MLLT6P55198 1093 aaPredicted RBP8.58□□□□□ -1.04
VPS53-214ENST00000572607 SLC8A3P57103 927 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 TAF10Q12962 218 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 ORC1Q13415 861 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 MTF1Q14872 753 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 PDGFRLQ15198 375 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 CAMK4Q16566 473 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 FOXR2Q6PJQ5 311 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 FILIP1Q7Z7B0 1213 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 RALGPS2Q86X27 583 aaPredicted RBP8.58□□□□□ -1.04
VPS53-214ENST00000572607 ZC3H3Q8IXZ2 948 aaKnown RBP8.58□□□□□ -1.04
VPS53-214ENST00000572607 TTC8Q8TAM2 541 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 USP13Q92995 863 aaPredicted RBP8.58□□□□□ -1.04
VPS53-214ENST00000572607 NKD2Q969F2 451 aaPredicted RBP8.58□□□□□ -1.04
VPS53-214ENST00000572607 RSPRY1Q96DX4 576 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 GBP4Q96PP9 640 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 IER2Q9BTL4 223 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 TTLL2Q9BWV7 592 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 NACA2Q9H009 215 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 FAM124BQ9H5Z6 455 aaPredicted RBP8.58□□□□□ -1.04
VPS53-214ENST00000572607 APOBEC3GQ9HC16 384 aaKnown RBP8.58□□□□□ -1.04
VPS53-214ENST00000572607 FAM49BQ9NUQ9 324 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 SPATA6Q9NWH7 488 aaPredicted RBP8.58□□□□□ -1.04
VPS53-214ENST00000572607 COMMD8Q9NX08 183 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 NOTCH4Q99466 2003 aa8.58□□□□□ -1.04
VPS53-214ENST00000572607 CFAP47Q6ZTR5 3102 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 ZNF840PA6NDX5 716 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 SPECC1L-ADORA2AF8WAN1 911 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 GOLGA6L22H0YM25 854 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 ARNTLO00327 626 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 CILPO75339 1184 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 CCDC192P0DO97 292 aa8.57□□□□□ -1.04
VPS53-214ENST00000572607 TBXAS1P24557 533 aaPredicted RBP8.57□□□□□ -1.04
VPS53-214ENST00000572607 SLC5A3P53794 718 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms