RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 MYCBPQ99417 103 aaPredicted RBP23.77■■□□□ 1.4
VPS53-211ENST00000571805 VPS11Q9H270 941 aa23.77■■□□□ 1.4
VPS53-211ENST00000571805 HAO1Q9UJM8 370 aa23.77■■□□□ 1.4
VPS53-211ENST00000571805 TCRBV9S1A1TA0A576 114 aa23.77■■□□□ 1.4
VPS53-211ENST00000571805 ANP32DO95626 131 aa23.77■■□□□ 1.4
VPS53-211ENST00000571805 IL4RP24394 825 aa23.77■■□□□ 1.4
VPS53-211ENST00000571805 TFDP2Q14188 446 aa23.77■■□□□ 1.4
VPS53-211ENST00000571805 ZNF484Q5JVG2 852 aa23.77■■□□□ 1.4
VPS53-211ENST00000571805 OR6B2Q6IFH4 312 aa23.77■■□□□ 1.4
VPS53-211ENST00000571805 AGGF1Q8N302 714 aaeCLIP23.77■■□□□ 1.4
VPS53-211ENST00000571805 CLMNQ96JQ2 1002 aa23.77■■□□□ 1.4
VPS53-211ENST00000571805 RAB3IPQ96QF0 476 aaPredicted RBP23.77■■□□□ 1.4
VPS53-211ENST00000571805 PPP1R16BQ96T49 567 aa23.77■■□□□ 1.4
VPS53-211ENST00000571805 WDR91A4D1P6 747 aa23.76■■□□□ 1.39
VPS53-211ENST00000571805 ADM5C9JUS6 153 aa23.76■■□□□ 1.39
VPS53-211ENST00000571805 C2CD2LO14523 706 aa23.76■■□□□ 1.39
VPS53-211ENST00000571805 ARF4P18085 180 aaPredicted RBP23.76■■□□□ 1.39
VPS53-211ENST00000571805 TMEM132DQ14C87 1099 aa23.76■■□□□ 1.39
VPS53-211ENST00000571805 SPDYAQ5MJ70 313 aa23.76■■□□□ 1.39
VPS53-211ENST00000571805 FAM182AQ5T1J6 154 aa23.76■■□□□ 1.39
VPS53-211ENST00000571805 SH2D5Q6ZV89 423 aa23.76■■□□□ 1.39
VPS53-211ENST00000571805 GIMAP7Q8NHV1 300 aa23.76■■□□□ 1.39
VPS53-211ENST00000571805 SLC44A1Q8WWI5 657 aa23.76■■□□□ 1.39
VPS53-211ENST00000571805 SLC7A6OSQ96CW6 309 aaPredicted RBP23.76■■□□□ 1.39
VPS53-211ENST00000571805 GBA2Q9HCG7 927 aaPredicted RBP23.76■■□□□ 1.39
VPS53-211ENST00000571805 TSPAN16Q9UKR8 245 aa23.76■■□□□ 1.39
VPS53-211ENST00000571805 KBTBD13C9JR72 458 aa23.76■■□□□ 1.39
VPS53-211ENST00000571805 TTLL4Q14679 1199 aa23.76■■□□□ 1.39
VPS53-211ENST00000571805 SEPT7Q16181 437 aaKnown RBP23.76■■□□□ 1.39
VPS53-211ENST00000571805 SLC45A4Q5BKX6 768 aa23.76■■□□□ 1.39
VPS53-211ENST00000571805 PLD5Q8N7P1 536 aa23.76■■□□□ 1.39
VPS53-211ENST00000571805 ZNF398Q8TD17 642 aa23.76■■□□□ 1.39
VPS53-211ENST00000571805 INPP5DQ92835 1189 aa23.76■■□□□ 1.39
VPS53-211ENST00000571805 TMEM237Q96Q45 408 aa23.76■■□□□ 1.39
VPS53-211ENST00000571805 NPHS2Q9NP85 383 aa23.76■■□□□ 1.39
VPS53-211ENST00000571805 GEMIN8Q9NWZ8 242 aaKnown RBP23.76■■□□□ 1.39
VPS53-211ENST00000571805 KANSL3Q9P2N6 904 aa23.76■■□□□ 1.39
VPS53-211ENST00000571805 CXCL11O14625 94 aa23.75■■□□□ 1.39
VPS53-211ENST00000571805 CHADO15335 359 aa23.75■■□□□ 1.39
VPS53-211ENST00000571805 MT-ND3P03897 115 aa23.75■■□□□ 1.39
VPS53-211ENST00000571805 KBTBD12Q3ZCT8 623 aa23.75■■□□□ 1.39
VPS53-211ENST00000571805 CCDC14Q49A88 953 aa23.75■■□□□ 1.39
VPS53-211ENST00000571805 SYCP2LQ5T4T6 812 aa23.75■■□□□ 1.39
VPS53-211ENST00000571805 C1orf228Q6PIY5 440 aa23.75■■□□□ 1.39
VPS53-211ENST00000571805 CCDC125Q86Z20 511 aa23.75■■□□□ 1.39
VPS53-211ENST00000571805 SERAC1Q96JX3 654 aa23.75■■□□□ 1.39
VPS53-211ENST00000571805 KIAA1257Q9ULG3 409 aa23.75■■□□□ 1.39
VPS53-211ENST00000571805 H7C0C1 242 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 PRPSAP2O60256 369 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 AVILO75366 819 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 GRAP2O75791 330 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 STAU1O95793 577 aaKnown RBP23.74■■□□□ 1.39
VPS53-211ENST00000571805 DHRS4L1P0CG22 281 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 ATP5OP48047 213 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 ZNF200P98182 395 aaPredicted RBP23.74■■□□□ 1.39
VPS53-211ENST00000571805 PTK7Q13308 1070 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 CDO1Q16878 200 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 WDR78Q5VTH9 848 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 NLRP9Q7RTR0 991 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 ERO1BQ86YB8 467 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 PTPRN2Q92932 1015 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 MANSC1Q9H8J5 431 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 ITGA11Q9UKX5 1188 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 NUMBLQ9Y6R0 609 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 IQANK1A0A1B0GTG1 560 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 WFS1O76024 890 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 C1QAP02745 245 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 ELF1P32519 619 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 ETV4P43268 484 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 SLC18A2Q05940 514 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 ARHGAP1Q07960 439 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 FAAP100Q0VG06 881 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 FYB2Q5VWT5 728 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 C12orf29Q8N999 325 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 FAF2Q96CS3 445 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 RTP4Q96DX8 246 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 DPP3Q9NY33 737 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 C15orf41Q9Y2V0 281 aa23.74■■□□□ 1.39
VPS53-211ENST00000571805 NEK3P51956 506 aa23.73■■□□□ 1.39
VPS53-211ENST00000571805 RBP5P82980 135 aa23.73■■□□□ 1.39
VPS53-211ENST00000571805 ATP11AP98196 1134 aa23.73■■□□□ 1.39
VPS53-211ENST00000571805 PQLC3Q8N755 202 aa23.73■■□□□ 1.39
VPS53-211ENST00000571805 NT5C1AQ9BXI3 368 aa23.73■■□□□ 1.39
VPS53-211ENST00000571805 FAM124BQ9H5Z6 455 aaPredicted RBP23.73■■□□□ 1.39
VPS53-211ENST00000571805 PNPLA8Q9NP80 782 aa23.73■■□□□ 1.39
VPS53-211ENST00000571805 NOP53Q9NZM5 478 aaKnown RBP23.73■■□□□ 1.39
VPS53-211ENST00000571805 C2CD2Q9Y426 696 aa23.73■■□□□ 1.39
VPS53-211ENST00000571805 VTNP04004 478 aa23.73■■□□□ 1.39
VPS53-211ENST00000571805 IREB2P48200 963 aaKnown RBP23.73■■□□□ 1.39
VPS53-211ENST00000571805 PDK2Q15119 407 aa23.73■■□□□ 1.39
VPS53-211ENST00000571805 GPATCH11Q8N954 259 aa23.73■■□□□ 1.39
VPS53-211ENST00000571805 RFWD2Q8NHY2 731 aa23.73■■□□□ 1.39
VPS53-211ENST00000571805 KHSRPQ92945 711 aaKnown RBP eCLIP23.73■■□□□ 1.39
VPS53-211ENST00000571805 MIS12Q9H081 205 aa23.73■■□□□ 1.39
VPS53-211ENST00000571805 PAK5Q9P286 719 aa23.73■■□□□ 1.39
VPS53-211ENST00000571805 DPYSL4O14531 572 aa23.72■■□□□ 1.39
VPS53-211ENST00000571805 LPXNO60711 386 aa23.72■■□□□ 1.39
VPS53-211ENST00000571805 SPAG6O75602 509 aa23.72■■□□□ 1.39
VPS53-211ENST00000571805 LGALS2P05162 132 aa23.72■■□□□ 1.39
VPS53-211ENST00000571805 YWHAGP61981 247 aaKnown RBP eCLIP23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms