RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 LYPLA1O75608 230 aaPredicted RBP15.08■□□□□ 0
VPS35-210ENST00000568784 KCNA4P22459 653 aa15.08■□□□□ 0
VPS35-210ENST00000568784 GRIK3Q13003 919 aa15.08■□□□□ 0
VPS35-210ENST00000568784 NIPA1Q7RTP0 329 aa15.08■□□□□ 0
VPS35-210ENST00000568784 ZNF526Q8TF50 670 aaPredicted RBP15.08■□□□□ 0
VPS35-210ENST00000568784 MMP19Q99542 508 aa15.08■□□□□ 0
VPS35-210ENST00000568784 MRIQ9BWK5 157 aa15.08■□□□□ 0
VPS35-210ENST00000568784 CDK5RAP2Q96SN8 1893 aa15.08■□□□□ 0
VPS35-210ENST00000568784 PRR5-ARHGAP8B1AHC4 643 aa15.08■□□□□ 0
VPS35-210ENST00000568784 KRT38O76015 456 aa15.08■□□□□ 0
VPS35-210ENST00000568784 OSBPP22059 807 aa15.08■□□□□ 0
VPS35-210ENST00000568784 ARHGAP8P85298 464 aa15.08■□□□□ 0
VPS35-210ENST00000568784 PEX6Q13608 980 aa15.08■□□□□ 0
VPS35-210ENST00000568784 CPXM1Q96SM3 734 aa15.08■□□□□ 0
VPS35-210ENST00000568784 ZNF184Q99676 751 aaPredicted RBP15.08■□□□□ 0
VPS35-210ENST00000568784 HAPLN2Q9GZV7 340 aa15.08■□□□□ 0
VPS35-210ENST00000568784 hCG_2014768A0A024R1R8 64 aa15.08■□□□□ 0
VPS35-210ENST00000568784 KLRG2A4D1S0 409 aaPredicted RBP15.08■□□□□ 0
VPS35-210ENST00000568784 CFLARO15519 480 aa15.08■□□□□ 0
VPS35-210ENST00000568784 SNUPNO95149 360 aaKnown RBP15.08■□□□□ 0
VPS35-210ENST00000568784 ACADSP16219 412 aa15.08■□□□□ 0
VPS35-210ENST00000568784 ASPHQ12797 758 aa15.08■□□□□ 0
VPS35-210ENST00000568784 IRGCQ6NXR0 463 aa15.08■□□□□ 0
VPS35-210ENST00000568784 SLC26A11Q86WA9 606 aa15.08■□□□□ 0
VPS35-210ENST00000568784 GSTCDQ8NEC7 633 aa15.08■□□□□ 0
VPS35-210ENST00000568784 DCAKDQ8WVC6 231 aa15.08■□□□□ 0
VPS35-210ENST00000568784 NKD2Q969F2 451 aaPredicted RBP15.08■□□□□ 0
VPS35-210ENST00000568784 KLC2Q9H0B6 622 aa15.08■□□□□ 0
VPS35-210ENST00000568784 SNCAIPQ9Y6H5 919 aa15.08■□□□□ 0
VPS35-210ENST00000568784 CCDC78A2IDD5 438 aa15.07■□□□□ 0
VPS35-210ENST00000568784 PMM2O15305 246 aa15.07■□□□□ 0
VPS35-210ENST00000568784 HNRNPCL1O60812 293 aaKnown RBP15.07■□□□□ 0
VPS35-210ENST00000568784 RBL1P28749 1068 aa15.07■□□□□ 0
VPS35-210ENST00000568784 YWHAEP62258 255 aaKnown RBP15.07■□□□□ 0
VPS35-210ENST00000568784 TTC39BQ5VTQ0 682 aaPredicted RBP15.07■□□□□ 0
VPS35-210ENST00000568784 CDCA2Q69YH5 1023 aaPredicted RBP15.07■□□□□ 0
VPS35-210ENST00000568784 WDR75Q8IWA0 830 aaKnown RBP15.07■□□□□ 0
VPS35-210ENST00000568784 ASCC2Q9H1I8 757 aaPredicted RBP15.07■□□□□ 0
VPS35-210ENST00000568784 NRBP2Q9NSY0 501 aa15.07■□□□□ 0
VPS35-210ENST00000568784 KANSL3Q9P2N6 904 aa15.07■□□□□ 0
VPS35-210ENST00000568784 E7ENQ6 273 aa15.07■□□□□ 0
VPS35-210ENST00000568784 OATP04181 439 aa15.07■□□□□ 0
VPS35-210ENST00000568784 PRKCBP05771 671 aa15.07■□□□□ 0
VPS35-210ENST00000568784 CNTN2Q02246 1040 aa15.07■□□□□ 0
VPS35-210ENST00000568784 RAB6CQ53S08 254 aa15.07■□□□□ 0
VPS35-210ENST00000568784 SH3TC2Q8TF17 1288 aa15.07■□□□□ 0
VPS35-210ENST00000568784 TRAPPC12Q8WVT3 735 aa15.07■□□□□ 0
VPS35-210ENST00000568784 NRG4Q8WWG1 115 aa15.07■□□□□ 0
VPS35-210ENST00000568784 RAB6CQ9H0N0 254 aa15.07■□□□□ 0
VPS35-210ENST00000568784 EURLQ9NYK6 297 aa15.07■□□□□ 0
VPS35-210ENST00000568784 TRPC5Q9UL62 973 aaPredicted RBP15.07■□□□□ 0
VPS35-210ENST00000568784 CXorf49A8MYA2 514 aaPredicted RBP15.07■□□□□ 0
VPS35-210ENST00000568784 HIC1Q14526 733 aa15.07■□□□□ 0
VPS35-210ENST00000568784 TRIP10Q15642 601 aa15.07■□□□□ 0
VPS35-210ENST00000568784 SPDYE2Q495Y8 402 aa15.07■□□□□ 0
VPS35-210ENST00000568784 PPP1R15BQ5SWA1 713 aa15.07■□□□□ 0
VPS35-210ENST00000568784 SLC35B2Q8TB61 432 aa15.07■□□□□ 0
VPS35-210ENST00000568784 EBF4Q9BQW3 602 aa15.07■□□□□ 0
VPS35-210ENST00000568784 ACSS2Q9NR19 701 aa15.07■□□□□ 0
VPS35-210ENST00000568784 RNF19AQ9NV58 838 aa15.07■□□□□ 0
VPS35-210ENST00000568784 IL1RAPL1Q9NZN1 696 aa15.07■□□□□ 0
VPS35-210ENST00000568784 APOBEC2Q9Y235 224 aaKnown RBP15.07■□□□□ 0
VPS35-210ENST00000568784 VWA5AO00534 786 aa15.06■□□□□ 0
VPS35-210ENST00000568784 DESP17661 470 aa15.06■□□□□ 0
VPS35-210ENST00000568784 TCHHL1Q5QJ38 904 aaPredicted RBP15.06■□□□□ 0
VPS35-210ENST00000568784 DENND5BQ6ZUT9 1274 aa15.06■□□□□ 0
VPS35-210ENST00000568784 TREML1Q86YW5 311 aa15.06■□□□□ 0
VPS35-210ENST00000568784 MAP7D3Q8IWC1 876 aa15.06■□□□□ 0
VPS35-210ENST00000568784 PPP4R1Q8TF05 950 aa15.06■□□□□ 0
VPS35-210ENST00000568784 MRPL4Q9BYD3 311 aaKnown RBP15.06■□□□□ 0
VPS35-210ENST00000568784 FAM49BQ9NUQ9 324 aa15.06■□□□□ 0
VPS35-210ENST00000568784 ASNSD1Q9NWL6 643 aa15.06■□□□□ 0
VPS35-210ENST00000568784 SLC17A6Q9P2U8 582 aa15.06■□□□□ 0
VPS35-210ENST00000568784 DNAJC16Q9Y2G8 782 aa15.06■□□□□ 0
VPS35-210ENST00000568784 MED7O43513 233 aa15.06■□□□□ 0
VPS35-210ENST00000568784 F7P08709 466 aaPredicted RBP15.06■□□□□ 0
VPS35-210ENST00000568784 SUPT20HL2P0C7V6 817 aa15.06■□□□□ 0
VPS35-210ENST00000568784 CXCL8P10145 99 aa15.06■□□□□ 0
VPS35-210ENST00000568784 SUPT20HL1Q3ZLR7 823 aa15.06■□□□□ 0
VPS35-210ENST00000568784 BBS12Q6ZW61 710 aa15.06■□□□□ 0
VPS35-210ENST00000568784 NAT8LQ8N9F0 302 aa15.06■□□□□ 0
VPS35-210ENST00000568784 WRNIP1Q96S55 665 aa15.06■□□□□ 0
VPS35-210ENST00000568784 NTPCRQ9BSD7 190 aaKnown RBP15.06■□□□□ 0
VPS35-210ENST00000568784 DHX35Q9H5Z1 703 aaKnown RBP15.06■□□□□ 0
VPS35-210ENST00000568784 SBF2Q86WG5 1849 aa15.06■□□□□ 0
VPS35-210ENST00000568784 MAGEA13PA6NCF6 341 aa15.06■□□□□ 0
VPS35-210ENST00000568784 WNT10BO00744 389 aa15.06■□□□□ 0
VPS35-210ENST00000568784 C6orf222P0C671 652 aaPredicted RBP15.06■□□□□ 0
VPS35-210ENST00000568784 ABCG1P45844 678 aa15.06■□□□□ 0
VPS35-210ENST00000568784 CUL3Q13618 768 aa15.06■□□□□ 0
VPS35-210ENST00000568784 TFDP2Q14188 446 aa15.06■□□□□ 0
VPS35-210ENST00000568784 CES3Q6UWW8 571 aa15.06■□□□□ 0
VPS35-210ENST00000568784 CCNYQ8ND76 341 aa15.06■□□□□ 0
VPS35-210ENST00000568784 RXFP2Q8WXD0 754 aa15.06■□□□□ 0
VPS35-210ENST00000568784 LPAR1Q92633 364 aa15.06■□□□□ 0
VPS35-210ENST00000568784 ASS1P00966 412 aaKnown RBP15.05■□□□□ 0
VPS35-210ENST00000568784 STAT5BP51692 787 aa15.05■□□□□ 0
VPS35-210ENST00000568784 PPP1R2P3Q6NXS1 205 aa15.05■□□□□ 0
VPS35-210ENST00000568784 SAMD7Q7Z3H4 446 aa15.05■□□□□ 0
VPS35-210ENST00000568784 GPRASP2Q96D09 838 aa15.05■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms