RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 ZNF287Q9HBT7 754 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 GBA2Q9HCG7 927 aaPredicted RBP3.27□□□□□ -1.89
VPS35-209ENST00000568642 PNPLA8Q9NP80 782 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 TM7SF3Q9NS93 570 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 SEPT11Q9NVA2 429 aaKnown RBP3.27□□□□□ -1.89
VPS35-209ENST00000568642 PRR13Q9NZ81 148 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 TBC1D14Q9P2M4 693 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 PCDHB12Q9Y5F1 795 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 MRC1P22897 1456 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 NRXN2Q9P2S2 1712 aa3.27□□□□□ -1.89
VPS35-209ENST00000568642 EP300Q09472 2414 aaPredicted RBP3.27□□□□□ -1.89
VPS35-209ENST00000568642 BRWD1Q9NSI6 2320 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 GPR75-ASB3A0A0A6YYF3 556 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 SLC12A8A0AV02 714 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 AKR1B15C9JRZ8 316 aaPredicted RBP3.26□□□□□ -1.89
VPS35-209ENST00000568642 H7C1D1 291 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 K7EPI3 171 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 HNRNPDLO14979 420 aaKnown RBP3.26□□□□□ -1.89
VPS35-209ENST00000568642 TMPRSS2O15393 492 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 MTSS1O43312 755 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 DHHO43323 396 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 ASNA1O43681 348 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 LRRN2O75325 713 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 TPPPO94811 219 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 SCGB1D1O95968 90 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 F9P00740 461 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 MT-ND5P03915 603 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 CLEC3BP05452 202 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 PRKCBP05771 671 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 CYP21A2P08686 494 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 DLDP09622 509 aaKnown RBP3.26□□□□□ -1.89
VPS35-209ENST00000568642 THEGLP0DJG4 465 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 SRGAP2BP0DMP2 458 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 PLS3P13797 630 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 CPB1P15086 417 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 IFNGR1P15260 489 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 SYN1P17600 705 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 CHMP24386 653 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 CASQ1P31415 396 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 GBP1P32455 592 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 BMPR1AP36894 532 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 GARSP41250 739 aaKnown RBP3.26□□□□□ -1.89
VPS35-209ENST00000568642 KCNC1P48547 511 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 GPC3P51654 580 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 ZNF41P51814 821 aaPredicted RBP3.26□□□□□ -1.89
VPS35-209ENST00000568642 ADARP55265 1226 aaKnown RBP3.26□□□□□ -1.89
VPS35-209ENST00000568642 EVCP57679 992 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 ARHGAP8P85298 464 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 AMPD2Q01433 879 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 GBE1Q04446 702 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 KLHL30Q0D2K2 578 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 BFSP1Q12934 665 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 IRF3Q14653 427 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 PUM1Q14671 1186 aaKnown RBP eCLIP3.26□□□□□ -1.89
VPS35-209ENST00000568642 POU4F3Q15319 338 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 EPHA7Q15375 998 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 TBCEQ15813 527 aaPredicted RBP3.26□□□□□ -1.89
VPS35-209ENST00000568642 ADRM1Q16186 407 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 PKN1Q16512 942 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 UGT8Q16880 541 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 ZNF674Q2M3X9 581 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 MUM1L1Q5H9M0 696 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 CC2D1BQ5T0F9 858 aaKnown RBP3.26□□□□□ -1.89
VPS35-209ENST00000568642 ZCCHC12Q6PEW1 402 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 IYDQ6PHW0 289 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 TRAT1Q6PIZ9 186 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 BTNL9Q6UXG8 535 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 UNQ6494/PRO21346Q6UXR6 183 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 CDC37L1Q7L3B6 337 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 PPP1R42Q7Z4L9 355 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 TMC3Q7Z5M5 1100 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 THAP5Q7Z6K1 395 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 SLFN11Q7Z7L1 901 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 RALYLQ86SE5 291 aaKnown RBP3.26□□□□□ -1.89
VPS35-209ENST00000568642 GPR149Q86SP6 731 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 NLRP10Q86W26 655 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 RAB11FIP4Q86YS3 637 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 WFDC3Q8IUB2 231 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 TP53INP2Q8IXH6 220 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 TMEFF1Q8IYR6 380 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 LZTR1Q8N653 840 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 CD99L2Q8TCZ2 262 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 BICD2Q8TD16 824 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 CSGALNACT1Q8TDX6 532 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 PIGOQ8TEQ8 1089 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 ZFAND2BQ8WV99 257 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 RGMAQ96B86 450 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 ELMO3Q96BJ8 720 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 CNDP1Q96KN2 507 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 COG8Q96MW5 612 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 FCRL3Q96P31 734 aaPredicted RBP3.26□□□□□ -1.89
VPS35-209ENST00000568642 REEP2Q9BRK0 252 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 TRIM54Q9BYV2 358 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 MKRN2Q9H000 416 aaKnown RBP3.26□□□□□ -1.89
VPS35-209ENST00000568642 ZNF552Q9H707 407 aaPredicted RBP3.26□□□□□ -1.89
VPS35-209ENST00000568642 NECTIN3Q9NQS3 549 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 SNX15Q9NRS6 342 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 GPATCH2Q9NW75 528 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 HPF1Q9NWY4 346 aa3.26□□□□□ -1.89
VPS35-209ENST00000568642 RGL1Q9NZL6 768 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms