RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 HSPH1Q92598 858 aa6.53□□□□□ -1.36
CLN3-223ENST00000566472 ACSF2Q96CM8 615 aaPredicted RBP6.53□□□□□ -1.36
CLN3-223ENST00000566472 LRRC39Q96DD0 335 aa6.53□□□□□ -1.36
CLN3-223ENST00000566472 MAML3Q96JK9 1138 aa6.53□□□□□ -1.36
CLN3-223ENST00000566472 MS4A4AQ96JQ5 239 aa6.53□□□□□ -1.36
CLN3-223ENST00000566472 ZNF668Q96K58 619 aaPredicted RBP6.53□□□□□ -1.36
CLN3-223ENST00000566472 HSFY1Q96LI6 401 aa6.53□□□□□ -1.36
CLN3-223ENST00000566472 PEBP4Q96S96 227 aa6.53□□□□□ -1.36
CLN3-223ENST00000566472 TINF2Q9BSI4 451 aa6.53□□□□□ -1.36
CLN3-223ENST00000566472 PCDH18Q9HCL0 1135 aa6.53□□□□□ -1.36
CLN3-223ENST00000566472 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.53□□□□□ -1.36
CLN3-223ENST00000566472 FGFR1OP2Q9NVK5 253 aa6.53□□□□□ -1.36
CLN3-223ENST00000566472 TMEM51Q9NW97 253 aa6.53□□□□□ -1.36
CLN3-223ENST00000566472 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.53□□□□□ -1.36
CLN3-223ENST00000566472 KLHL14Q9P2G3 628 aa6.53□□□□□ -1.36
CLN3-223ENST00000566472 XPO7Q9UIA9 1087 aaKnown RBP6.53□□□□□ -1.36
CLN3-223ENST00000566472 RABGEF1Q9UJ41 708 aa6.53□□□□□ -1.36
CLN3-223ENST00000566472 STARD13Q9Y3M8 1113 aa6.53□□□□□ -1.36
CLN3-223ENST00000566472 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.53□□□□□ -1.36
CLN3-223ENST00000566472 ANK1P16157 1881 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 IQANK1A0A1B0GTG1 560 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 GLTPD2A6NH11 291 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 BTBD19C9JJ37 291 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 POC1B-GALNT4F8VUJ3 575 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 TYROBPO43914 113 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 GPR32O75388 356 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 ATP5HO75947 161 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 TMEM63AO94886 807 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 IL1BP01584 269 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 CD48P09326 243 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 DARSP14868 501 aaKnown RBP6.52□□□□□ -1.37
CLN3-223ENST00000566472 KCNE1P15382 129 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 MSH2P43246 934 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 NR2C2P49116 596 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 GDF10P55107 478 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 BCAR1P56945 870 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 WDR4P57081 412 aaKnown RBP6.52□□□□□ -1.37
CLN3-223ENST00000566472 BST2Q10589 180 aaKnown RBP6.52□□□□□ -1.37
CLN3-223ENST00000566472 ORC1Q13415 861 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 RIPK1Q13546 671 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 MPP2Q14168 576 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 KCNJ11Q14654 390 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 FASTKD3Q14CZ7 662 aaKnown RBP6.52□□□□□ -1.37
CLN3-223ENST00000566472 PKN2Q16513 984 aaKnown RBP6.52□□□□□ -1.37
CLN3-223ENST00000566472 DPYSL2Q16555 572 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 SPRED3Q2MJR0 410 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 CCDC14Q49A88 953 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 KCNT1Q5JUK3 1230 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 GJC2Q5T442 439 aaPredicted RBP6.52□□□□□ -1.37
CLN3-223ENST00000566472 SWT1Q5T5J6 900 aaKnown RBP6.52□□□□□ -1.37
CLN3-223ENST00000566472 ANKRD22Q5VYY1 191 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 C9orf57Q5W0N0 161 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 FBXW10Q5XX13 1052 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 TRNP1Q6NT89 227 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 CYB5D1Q6P9G0 228 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 DARS2Q6PI48 645 aaKnown RBP6.52□□□□□ -1.37
CLN3-223ENST00000566472 ALKAL1Q6UXT8 129 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 PAXIP1Q6ZW49 1069 aaPredicted RBP6.52□□□□□ -1.37
CLN3-223ENST00000566472 BZW1Q7L1Q6 419 aaKnown RBP6.52□□□□□ -1.37
CLN3-223ENST00000566472 DPH6Q7L8W6 267 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 SLC26A9Q7LBE3 791 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 STRADAQ7RTN6 431 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 CATSPER4Q7RTX7 472 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 LIMS2Q7Z4I7 341 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 DPP9Q86TI2 863 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 TTC30AQ86WT1 665 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 UNC45BQ8IWX7 931 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 PALM2Q8IXS6 379 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 FUKQ8N0W3 1084 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 CRYBG2Q8N1P7 616 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 CCDC63Q8NA47 563 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 MCUQ8NE86 351 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 FBXO36Q8NEA4 188 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 UBA3Q8TBC4 463 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 MZB1Q8WU39 189 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 SLC35F5Q8WV83 523 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 BRI3BPQ8WY22 251 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 CENPIQ92674 756 aaPredicted RBP6.52□□□□□ -1.37
CLN3-223ENST00000566472 ZBTB10Q96DT7 871 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 CYTH2Q99418 400 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 PAFAH2Q99487 392 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 MRPL45Q9BRJ2 306 aaKnown RBP6.52□□□□□ -1.37
CLN3-223ENST00000566472 C11orf84Q9BUA3 381 aaPredicted RBP6.52□□□□□ -1.37
CLN3-223ENST00000566472 CALN1Q9BXU9 219 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 KLC2Q9H0B6 622 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 RXFP1Q9HBX9 757 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 KLC4Q9NSK0 619 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 MKS1Q9NXB0 559 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 GDAP2Q9NXN4 497 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 RCOR3Q9P2K3 495 aaPredicted RBP6.52□□□□□ -1.37
CLN3-223ENST00000566472 TBK1Q9UHD2 729 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 PCSK1NQ9UHG2 260 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 GTF2IRD1Q9UHL9 959 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 ZNF180Q9UJW8 692 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 PLXNB2O15031 1838 aa6.52□□□□□ -1.37
CLN3-223ENST00000566472 SF3B1O75533 1304 aaKnown RBP eCLIP6.51□□□□□ -1.37
CLN3-223ENST00000566472 C11orf97A0A1B0GVM6 126 aaPredicted RBP6.51□□□□□ -1.37
CLN3-223ENST00000566472 A6NJR5 290 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 HACD1B0YJ81 288 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 H7C0C1 242 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms