RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 MTF1Q14872 753 aa21.7■■□□□ 1.06
CLN3-212ENST00000564574 CTC1Q2NKJ3 1217 aa21.7■■□□□ 1.06
CLN3-212ENST00000564574 PM20D1Q6GTS8 502 aa21.7■■□□□ 1.06
CLN3-212ENST00000564574 DNAJB7Q7Z6W7 309 aaPredicted RBP21.7■■□□□ 1.06
CLN3-212ENST00000564574 GPR152Q8TDT2 470 aa21.7■■□□□ 1.06
CLN3-212ENST00000564574 OVCA2Q8WZ82 227 aa21.7■■□□□ 1.06
CLN3-212ENST00000564574 IRGQQ8WZA9 623 aa21.7■■□□□ 1.06
CLN3-212ENST00000564574 ULBP1Q9BZM6 244 aa21.7■■□□□ 1.06
CLN3-212ENST00000564574 INTUQ9ULD6 942 aa21.7■■□□□ 1.06
CLN3-212ENST00000564574 SCML2Q9UQR0 700 aa21.7■■□□□ 1.06
CLN3-212ENST00000564574 NCANO14594 1321 aa21.7■■□□□ 1.06
CLN3-212ENST00000564574 OBSL1O75147 1896 aa21.69■■□□□ 1.06
CLN3-212ENST00000564574 DENND4CQ5VZ89 1909 aa21.69■■□□□ 1.06
CLN3-212ENST00000564574 CCDC195A0A1B0GUA6 201 aa21.69■■□□□ 1.06
CLN3-212ENST00000564574 ANKRD62A6NC57 917 aa21.69■■□□□ 1.06
CLN3-212ENST00000564574 ZNF263O14978 683 aa21.69■■□□□ 1.06
CLN3-212ENST00000564574 CCL16O15467 120 aa21.69■■□□□ 1.06
CLN3-212ENST00000564574 LINC01565O15544 149 aa21.69■■□□□ 1.06
CLN3-212ENST00000564574 H2AFZP0C0S5 128 aa21.69■■□□□ 1.06
CLN3-212ENST00000564574 HMGA1P17096 107 aaKnown RBP21.69■■□□□ 1.06
CLN3-212ENST00000564574 PTPN2P17706 415 aa21.69■■□□□ 1.06
CLN3-212ENST00000564574 SCNN1AP37088 669 aa21.69■■□□□ 1.06
CLN3-212ENST00000564574 MAGEA1P43355 309 aa21.69■■□□□ 1.06
CLN3-212ENST00000564574 MRPS5P82675 430 aaKnown RBP21.69■■□□□ 1.06
CLN3-212ENST00000564574 RBM10P98175 930 aaKnown RBP21.69■■□□□ 1.06
CLN3-212ENST00000564574 MTMR3Q13615 1198 aa21.69■■□□□ 1.06
CLN3-212ENST00000564574 TOGARAM2Q6ZUX3 1019 aa21.69■■□□□ 1.06
CLN3-212ENST00000564574 H2AFVQ71UI9 128 aa21.69■■□□□ 1.06
CLN3-212ENST00000564574 MICALL1Q8N3F8 863 aa21.69■■□□□ 1.06
CLN3-212ENST00000564574 TXLNBQ8N3L3 684 aa21.69■■□□□ 1.06
CLN3-212ENST00000564574 LEMD2Q8NC56 503 aa21.69■■□□□ 1.06
CLN3-212ENST00000564574 PDZD8Q8NEN9 1154 aa21.69■■□□□ 1.06
CLN3-212ENST00000564574 SCAMP5Q8TAC9 235 aa21.69■■□□□ 1.06
CLN3-212ENST00000564574 PABPC5Q96DU9 382 aaKnown RBP21.69■■□□□ 1.06
CLN3-212ENST00000564574 SLITRK1Q96PX8 696 aa21.69■■□□□ 1.06
CLN3-212ENST00000564574 COL6A3P12111 3177 aa21.69■■□□□ 1.06
CLN3-212ENST00000564574 PAPSS1O43252 624 aaPredicted RBP21.68■■□□□ 1.06
CLN3-212ENST00000564574 FGF19O95750 216 aa21.68■■□□□ 1.06
CLN3-212ENST00000564574 PPP3CCP48454 512 aa21.68■■□□□ 1.06
CLN3-212ENST00000564574 DAOAP59103 153 aa21.68■■□□□ 1.06
CLN3-212ENST00000564574 USP46P62068 366 aa21.68■■□□□ 1.06
CLN3-212ENST00000564574 IFRD2Q12894 506 aaPredicted RBP21.68■■□□□ 1.06
CLN3-212ENST00000564574 OR6B2Q6IFH4 312 aa21.68■■□□□ 1.06
CLN3-212ENST00000564574 FAM183BPQ6ZVS7 135 aa21.68■■□□□ 1.06
CLN3-212ENST00000564574 XYLT1Q86Y38 959 aa21.68■■□□□ 1.06
CLN3-212ENST00000564574 ARHGAP18Q8N392 663 aa21.68■■□□□ 1.06
CLN3-212ENST00000564574 FBXO32Q969P5 355 aa21.68■■□□□ 1.06
CLN3-212ENST00000564574 ZNF707Q96C28 371 aaPredicted RBP21.68■■□□□ 1.06
CLN3-212ENST00000564574 KCNF1Q9H3M0 494 aa21.68■■□□□ 1.06
CLN3-212ENST00000564574 ASNSD1Q9NWL6 643 aa21.68■■□□□ 1.06
CLN3-212ENST00000564574 CLDND1Q9NY35 253 aa21.68■■□□□ 1.06
CLN3-212ENST00000564574 TJP2Q9UDY2 1190 aa21.68■■□□□ 1.06
CLN3-212ENST00000564574 MAGED2Q9UNF1 606 aaPredicted RBP21.68■■□□□ 1.06
CLN3-212ENST00000564574 C2orf16Q68DN1 1984 aa21.68■■□□□ 1.06
CLN3-212ENST00000564574 PIK3R2O00459 728 aa21.67■■□□□ 1.06
CLN3-212ENST00000564574 GLI1P08151 1106 aa21.67■■□□□ 1.06
CLN3-212ENST00000564574 USP17L7P0C7H9 530 aa21.67■■□□□ 1.06
CLN3-212ENST00000564574 TMEM253P0C7T8 217 aa21.67■■□□□ 1.06
CLN3-212ENST00000564574 GALCP54803 685 aa21.67■■□□□ 1.06
CLN3-212ENST00000564574 SLC6A3Q01959 620 aa21.67■■□□□ 1.06
CLN3-212ENST00000564574 EFHC1Q5JVL4 640 aa21.67■■□□□ 1.06
CLN3-212ENST00000564574 CYP4A22Q5TCH4 519 aa21.67■■□□□ 1.06
CLN3-212ENST00000564574 SCUBE3Q8IX30 993 aa21.67■■□□□ 1.06
CLN3-212ENST00000564574 STKLD1Q8NE28 680 aa21.67■■□□□ 1.06
CLN3-212ENST00000564574 CTNNBL1Q8WYA6 563 aaPredicted RBP21.67■■□□□ 1.06
CLN3-212ENST00000564574 SMG7Q92540 1137 aaKnown RBP21.67■■□□□ 1.06
CLN3-212ENST00000564574 ZNF653Q96CK0 615 aa21.67■■□□□ 1.06
CLN3-212ENST00000564574 MCRS1Q96EZ8 462 aa21.67■■□□□ 1.06
CLN3-212ENST00000564574 TRIM62Q9BVG3 475 aa21.67■■□□□ 1.06
CLN3-212ENST00000564574 AVENQ9NQS1 362 aaPredicted RBP21.67■■□□□ 1.06
CLN3-212ENST00000564574 ASAH2Q9NR71 780 aa21.67■■□□□ 1.06
CLN3-212ENST00000564574 PCDHA13Q9Y5I0 950 aa21.67■■□□□ 1.06
CLN3-212ENST00000564574 PSEN1P49768 467 aa21.66■■□□□ 1.06
CLN3-212ENST00000564574 EPHA5P54756 1037 aa21.66■■□□□ 1.06
CLN3-212ENST00000564574 GPC5P78333 572 aa21.66■■□□□ 1.06
CLN3-212ENST00000564574 ITIH3Q06033 890 aa21.66■■□□□ 1.06
CLN3-212ENST00000564574 TAF10Q12962 218 aa21.66■■□□□ 1.06
CLN3-212ENST00000564574 PABPC1LQ4VXU2 614 aaKnown RBP21.66■■□□□ 1.06
CLN3-212ENST00000564574 OLFML1Q6UWY5 402 aa21.66■■□□□ 1.06
CLN3-212ENST00000564574 MON1AQ86VX9 555 aa21.66■■□□□ 1.06
CLN3-212ENST00000564574 TMC8Q8IU68 726 aa21.66■■□□□ 1.06
CLN3-212ENST00000564574 C3orf20Q8ND61 904 aa21.66■■□□□ 1.06
CLN3-212ENST00000564574 GOLGA1Q92805 767 aa21.66■■□□□ 1.06
CLN3-212ENST00000564574 CORO1BQ9BR76 489 aa21.66■■□□□ 1.06
CLN3-212ENST00000564574 LRRC3Q9BY71 257 aa21.66■■□□□ 1.06
CLN3-212ENST00000564574 PIDD1Q9HB75 910 aa21.66■■□□□ 1.06
CLN3-212ENST00000564574 TLR8Q9NR97 1041 aaKnown RBP21.66■■□□□ 1.06
CLN3-212ENST00000564574 CLEC1BQ9P126 229 aa21.66■■□□□ 1.06
CLN3-212ENST00000564574 CNOT8Q9UFF9 292 aaKnown RBP21.66■■□□□ 1.06
CLN3-212ENST00000564574 SCINQ9Y6U3 715 aa21.66■■□□□ 1.06
CLN3-212ENST00000564574 ANAPC1Q9H1A4 1944 aa21.66■■□□□ 1.06
CLN3-212ENST00000564574 TBX10O75333 385 aa21.65■■□□□ 1.06
CLN3-212ENST00000564574 ABCB4P21439 1286 aa21.65■■□□□ 1.06
CLN3-212ENST00000564574 RRM1P23921 792 aa21.65■■□□□ 1.06
CLN3-212ENST00000564574 CDC25CP30307 473 aa21.65■■□□□ 1.06
CLN3-212ENST00000564574 C2CD6Q53TS8 623 aa21.65■■□□□ 1.06
CLN3-212ENST00000564574 RARS2Q5T160 578 aaKnown RBP21.65■■□□□ 1.06
CLN3-212ENST00000564574 PLEKHA7Q6IQ23 1121 aa21.65■■□□□ 1.06
CLN3-212ENST00000564574 DNAJC24Q6P3W2 148 aa21.65■■□□□ 1.06
CLN3-212ENST00000564574 SYCE2Q6PIF2 218 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms