RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 ITGB3P05106 788 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 KRT19P08727 400 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 ATXN1LP0C7T5 689 aaKnown RBP7.82□□□□□ -1.16
VPS4A-203ENST00000564399 PLCG1P19174 1290 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 NDUFV2P19404 249 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 BDNFP23560 247 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 ABCD1P33897 745 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 ABCG1P45844 678 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 PPP3CCP48454 512 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 TOB1P50616 345 aaPredicted RBP7.82□□□□□ -1.16
VPS4A-203ENST00000564399 ANAPC15P60006 121 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 USP46P62068 366 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 PSMC1P62191 440 aaKnown RBP7.82□□□□□ -1.16
VPS4A-203ENST00000564399 CYP27A1Q02318 531 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 IFRD2Q12894 506 aaPredicted RBP7.82□□□□□ -1.16
VPS4A-203ENST00000564399 GRIK2Q13002 908 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 ANO4Q32M45 955 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 CCDC157Q569K6 752 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 HYIQ5T013 277 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 VSTM1Q6UX27 236 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 KIAA1324Q6UXG2 1013 aaKnown RBP7.82□□□□□ -1.16
VPS4A-203ENST00000564399 TMPRSS7Q7RTY8 843 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 GLRX5Q86SX6 157 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 OSTM1Q86WC4 334 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 DDX42Q86XP3 938 aaKnown RBP eCLIP7.82□□□□□ -1.16
VPS4A-203ENST00000564399 NT5DC4Q86YG4 428 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 MARCH9Q86YJ5 346 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 CCDC83Q8IWF9 413 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 SCUBE3Q8IX30 993 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 CHPFQ8IZ52 775 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 ADGRF2Q8IZF7 708 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 KCTD17Q8N5Z5 321 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 CSGALNACT2Q8N6G5 542 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 KIAA1958Q8N8K9 716 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 KCNV2Q8TDN2 545 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 RHBDD1Q8TEB9 315 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 IPO4Q8TEX9 1081 aaKnown RBP7.82□□□□□ -1.16
VPS4A-203ENST00000564399 CACTINQ8WUQ7 758 aaKnown RBP7.82□□□□□ -1.16
VPS4A-203ENST00000564399 POMGNT1Q8WZA1 660 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 KCNN1Q92952 543 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 ZNF419Q96HQ0 510 aaPredicted RBP7.82□□□□□ -1.16
VPS4A-203ENST00000564399 SPATA17Q96L03 361 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 KIF2CQ99661 725 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 SYT15Q9BQS2 421 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 ZDHHC5Q9C0B5 715 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 MIR1-1HGQ9H1L0 117 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 GAREM1Q9H706 876 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 CACNA2D2Q9NY47 1150 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 KIAA1522Q9P206 1035 aaPredicted RBP7.82□□□□□ -1.16
VPS4A-203ENST00000564399 DKK4Q9UBT3 224 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 PCOLCE2Q9UKZ9 415 aa7.82□□□□□ -1.16
VPS4A-203ENST00000564399 R3HCC1Q9Y3T6 440 aaKnown RBP7.82□□□□□ -1.16
VPS4A-203ENST00000564399 SMG1Q96Q15 3661 aaKnown RBP7.81□□□□□ -1.16
VPS4A-203ENST00000564399 A0A087WV48 116 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 A0A1B0GTW7 788 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 A0A1W2PQF6 199 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 E2F8A0AVK6 867 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 VWA3AA6NCI4 1184 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 TRIM66O15016 1216 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 CBFA2T3O75081 653 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 CER1O95813 267 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 PDGFRBP09619 1106 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 MATKP42679 507 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 RBP5P82980 135 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 GTF2BQ00403 316 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 POU5F1Q01860 360 aaKnown RBP7.81□□□□□ -1.16
VPS4A-203ENST00000564399 ST3GAL1Q11201 340 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 TAF10Q12962 218 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 POSTNQ15063 836 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 MAPRE1Q15691 268 aaKnown RBP7.81□□□□□ -1.16
VPS4A-203ENST00000564399 TDRD10Q5VZ19 366 aaKnown RBP7.81□□□□□ -1.16
VPS4A-203ENST00000564399 GRAMD4Q6IC98 578 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 FAM171BQ6P995 826 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 CRELD2Q6UXH1 353 aaPredicted RBP7.81□□□□□ -1.16
VPS4A-203ENST00000564399 ZNF605Q86T29 641 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 MIB1Q86YT6 1006 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 PHTF2Q8N3S3 785 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 GALNT15Q8N3T1 639 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 ZCCHC9Q8N567 271 aaKnown RBP7.81□□□□□ -1.16
VPS4A-203ENST00000564399 TOP6BLQ8N6T0 577 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 LRRC52Q8N7C0 313 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 C1orf127Q8N9H9 656 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 TERB1Q8NA31 727 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 PIP4K2CQ8TBX8 421 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 NOC3LQ8WTT2 800 aaKnown RBP7.81□□□□□ -1.16
VPS4A-203ENST00000564399 MYLPFQ96A32 169 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 OTUB2Q96DC9 234 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 SLITRK1Q96PX8 696 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 CDC6Q99741 560 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 FAM213AQ9BRX8 229 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 IL21RQ9HBE5 538 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 TM7SF3Q9NS93 570 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 GDAP2Q9NXN4 497 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 SH3BP1Q9Y3L3 701 aa7.81□□□□□ -1.16
VPS4A-203ENST00000564399 CELSR3Q9NYQ7 3312 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 FAM149AA5PLN7 773 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 F8VP50 259 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 TK2O00142 265 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 GABRDO14764 452 aa7.8□□□□□ -1.16
VPS4A-203ENST00000564399 TRIM24O15164 1050 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms