RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 COG1Q8WTW3 980 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 SSH1Q8WYL5 1049 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 EXOC4Q96A65 974 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 THUMPD2Q9BTF0 503 aaKnown RBP5.51□□□□□ -1.53
VPS35-205ENST00000563984 SLC46A2Q9BY10 475 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 FAM126AQ9BYI3 521 aaPredicted RBP5.51□□□□□ -1.53
VPS35-205ENST00000563984 NACAP1Q9BZK3 213 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 BRD8Q9H0E9 1235 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 PUS7LQ9H0K6 701 aaKnown RBP5.51□□□□□ -1.53
VPS35-205ENST00000563984 NCOR1P1Q9H4R4 102 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 VCPKMTQ9H867 229 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 NLRC4Q9NPP4 1024 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 HOMER3Q9NSC5 361 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 SLC5A4Q9NY91 659 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 ZIM2Q9NZV7 527 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 RRP7AQ9Y3A4 280 aaKnown RBP5.51□□□□□ -1.53
VPS35-205ENST00000563984 ATAD2BQ9ULI0 1458 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 BICRAQ9NZM4 1560 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 SYNDIG1LA6NDD5 238 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 GOLGA6L4A6NEF3 574 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 ZBTB14O43829 449 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 MGEA5O60502 916 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 TSPAN1O60635 241 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 DAB1O75553 588 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 ZNF189O75820 626 aaPredicted RBP5.5□□□□□ -1.53
VPS35-205ENST00000563984 SNX4O95219 450 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 RHOXF2BP0C7M4 288 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 EEF2P13639 858 aaKnown RBP5.5□□□□□ -1.53
VPS35-205ENST00000563984 P4HA1P13674 534 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 CHMLP26374 656 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 APOBEC3AP31941 199 aaPredicted RBP5.5□□□□□ -1.53
VPS35-205ENST00000563984 MCM5P33992 734 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 MCAMP43121 646 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 CCT5P48643 541 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 RAB27AP51159 221 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 CCNHP51946 323 aaPredicted RBP5.5□□□□□ -1.53
VPS35-205ENST00000563984 KRTAP10-9P60411 292 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 DR1Q01658 176 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 PPIDQ08752 370 aaKnown RBP5.5□□□□□ -1.53
VPS35-205ENST00000563984 BNIP1Q12981 228 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 KLF1Q13351 362 aaPredicted RBP5.5□□□□□ -1.53
VPS35-205ENST00000563984 MLC1Q15049 377 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 CLUL1Q15846 466 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 GFOD2Q3B7J2 385 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 MFSD14BQ5SR56 506 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 MBNL2Q5VZF2 373 aaKnown RBP5.5□□□□□ -1.53
VPS35-205ENST00000563984 ANKS6Q68DC2 871 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 GDF7Q7Z4P5 450 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 LDLRAD3Q86YD5 345 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 SPATA2LQ8IUW3 424 aaPredicted RBP5.5□□□□□ -1.53
VPS35-205ENST00000563984 TBC1D21Q8IYX1 336 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 TRMT2AQ8IZ69 625 aaKnown RBP5.5□□□□□ -1.53
VPS35-205ENST00000563984 ESX1Q8N693 406 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 LSMEM1Q8N8F7 131 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 ANKRD7Q92527 254 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 TFAP2CQ92754 450 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 DTNBP1Q96EV8 351 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 CEP295NLQ96MC4 621 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 STRBPQ96SI9 672 aaKnown RBP5.5□□□□□ -1.53
VPS35-205ENST00000563984 RHOXF2Q9BQY4 288 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 ADI1Q9BV57 179 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 SLC13A1Q9BZW2 595 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 PLCB1Q9NQ66 1216 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 HELLSQ9NRZ9 838 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 NKIRAS2Q9NYR9 191 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 ZNF711Q9Y462 761 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 MTF2Q9Y483 593 aaPredicted RBP5.5□□□□□ -1.53
VPS35-205ENST00000563984 SNX8Q9Y5X2 465 aa5.5□□□□□ -1.53
VPS35-205ENST00000563984 ITIH6Q6UXX5 1313 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 GAGE12BA1L429 117 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 GAGE12HA6NDE8 117 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 TMEM191CA6NGB0 347 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 TRIM75PA6NK02 468 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 AHRRA9YTQ3 701 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 LEFTY2O00292 366 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 ADCY6O43306 1168 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 ENDOD1O94919 500 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 GUCA1CO95843 209 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 SNRPA1P09661 255 aaKnown RBP5.49□□□□□ -1.53
VPS35-205ENST00000563984 XRCC6P12956 609 aaKnown RBP eCLIP5.49□□□□□ -1.53
VPS35-205ENST00000563984 IL2RBP14784 551 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 GCFC2P16383 781 aaKnown RBP5.49□□□□□ -1.53
VPS35-205ENST00000563984 LAG3P18627 525 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 NR4A1P22736 598 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 PSMA4P25789 261 aaKnown RBP5.49□□□□□ -1.53
VPS35-205ENST00000563984 LMO1P25800 156 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 GALNSP34059 522 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 HOXD12P35452 270 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 POLD2P49005 469 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 PER3P56645 1201 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 RELQ04864 619 aaPredicted RBP5.49□□□□□ -1.53
VPS35-205ENST00000563984 ZBTB16Q05516 673 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 RUNX1T1Q06455 604 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 PPP3CAQ08209 521 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 MGAT2Q10469 447 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 LAMB3Q13751 1172 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 DPYSQ14117 519 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 CSRP2Q16527 193 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 ATP2B3Q16720 1220 aa5.49□□□□□ -1.53
VPS35-205ENST00000563984 SETMARQ53H47 684 aaPredicted RBP5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms