RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 CCL16O15467 120 aa17.44■□□□□ 0.38
VPS4A-202ENST00000562754 RTN3O95197 1032 aaPredicted RBP17.44■□□□□ 0.38
VPS4A-202ENST00000562754 GJB6O95452 261 aa17.44■□□□□ 0.38
VPS4A-202ENST00000562754 USP17L7P0C7H9 530 aa17.44■□□□□ 0.38
VPS4A-202ENST00000562754 TMEM253P0C7T8 217 aa17.44■□□□□ 0.38
VPS4A-202ENST00000562754 CSH1P0DML2 217 aa17.44■□□□□ 0.38
VPS4A-202ENST00000562754 CSH2P0DML3 217 aa17.44■□□□□ 0.38
VPS4A-202ENST00000562754 IGFBP4P22692 258 aa17.44■□□□□ 0.38
VPS4A-202ENST00000562754 DEKP35659 375 aaKnown RBP17.44■□□□□ 0.38
VPS4A-202ENST00000562754 VAV2P52735 878 aa17.44■□□□□ 0.38
VPS4A-202ENST00000562754 DAOAP59103 153 aa17.44■□□□□ 0.38
VPS4A-202ENST00000562754 KRT83P78385 493 aa17.44■□□□□ 0.38
VPS4A-202ENST00000562754 VEPH1Q14D04 833 aa17.44■□□□□ 0.38
VPS4A-202ENST00000562754 OR6B2Q6IFH4 312 aa17.44■□□□□ 0.38
VPS4A-202ENST00000562754 SCUBE3Q8IX30 993 aa17.44■□□□□ 0.38
VPS4A-202ENST00000562754 SCML4Q8N228 414 aa17.44■□□□□ 0.38
VPS4A-202ENST00000562754 PSMG2Q969U7 264 aa17.44■□□□□ 0.38
VPS4A-202ENST00000562754 MCRS1Q96EZ8 462 aa17.44■□□□□ 0.38
VPS4A-202ENST00000562754 TRIM11Q96F44 468 aa17.44■□□□□ 0.38
VPS4A-202ENST00000562754 GAS2L1Q99501 681 aaPredicted RBP17.44■□□□□ 0.38
VPS4A-202ENST00000562754 ZNF334Q9HCZ1 680 aaPredicted RBP17.44■□□□□ 0.38
VPS4A-202ENST00000562754 AVENQ9NQS1 362 aaPredicted RBP17.44■□□□□ 0.38
VPS4A-202ENST00000562754 CNGB3Q9NQW8 809 aa17.44■□□□□ 0.38
VPS4A-202ENST00000562754 CNOT8Q9UFF9 292 aaKnown RBP17.44■□□□□ 0.38
VPS4A-202ENST00000562754 INTUQ9ULD6 942 aa17.44■□□□□ 0.38
VPS4A-202ENST00000562754 STRIP2Q9ULQ0 834 aa17.44■□□□□ 0.38
VPS4A-202ENST00000562754 NOTCH4Q99466 2003 aa17.43■□□□□ 0.38
VPS4A-202ENST00000562754 GOLGA8SH3BPF8 625 aa17.43■□□□□ 0.38
VPS4A-202ENST00000562754 FBXO21O94952 628 aa17.43■□□□□ 0.38
VPS4A-202ENST00000562754 PAPLNO95428 1278 aa17.43■□□□□ 0.38
VPS4A-202ENST00000562754 ZBED1O96006 694 aa17.43■□□□□ 0.38
VPS4A-202ENST00000562754 CYP1A2P05177 515 aa17.43■□□□□ 0.38
VPS4A-202ENST00000562754 HNRNPA1P09651 372 aaKnown RBP eCLIP17.43■□□□□ 0.38
VPS4A-202ENST00000562754 MYBL1P10243 752 aa17.43■□□□□ 0.38
VPS4A-202ENST00000562754 YWHAQP27348 245 aa17.43■□□□□ 0.38
VPS4A-202ENST00000562754 PGFP49763 221 aa17.43■□□□□ 0.38
VPS4A-202ENST00000562754 MRPS5P82675 430 aaKnown RBP17.43■□□□□ 0.38
VPS4A-202ENST00000562754 ZNF268Q14587 947 aaPredicted RBP17.43■□□□□ 0.38
VPS4A-202ENST00000562754 PM20D1Q6GTS8 502 aa17.43■□□□□ 0.38
VPS4A-202ENST00000562754 PLEKHA7Q6IQ23 1121 aa17.43■□□□□ 0.38
VPS4A-202ENST00000562754 TMEM184AQ6ZMB5 413 aa17.43■□□□□ 0.38
VPS4A-202ENST00000562754 HFE2Q6ZVN8 426 aa17.43■□□□□ 0.38
VPS4A-202ENST00000562754 DNAJB7Q7Z6W7 309 aaPredicted RBP17.43■□□□□ 0.38
VPS4A-202ENST00000562754 C12orf76Q8N812 135 aaPredicted RBP17.43■□□□□ 0.38
VPS4A-202ENST00000562754 C3orf20Q8ND61 904 aa17.43■□□□□ 0.38
VPS4A-202ENST00000562754 MYLIPQ8WY64 445 aa17.43■□□□□ 0.38
VPS4A-202ENST00000562754 CTNNBL1Q8WYA6 563 aaPredicted RBP17.43■□□□□ 0.38
VPS4A-202ENST00000562754 CASP10Q92851 521 aa17.43■□□□□ 0.38
VPS4A-202ENST00000562754 KHSRPQ92945 711 aaKnown RBP eCLIP17.43■□□□□ 0.38
VPS4A-202ENST00000562754 ZNF707Q96C28 371 aaPredicted RBP17.43■□□□□ 0.38
VPS4A-202ENST00000562754 TRMT2BQ96GJ1 504 aaKnown RBP17.43■□□□□ 0.38
VPS4A-202ENST00000562754 GUCD1Q96NT3 240 aa17.43■□□□□ 0.38
VPS4A-202ENST00000562754 LACRTQ9GZZ8 138 aa17.43■□□□□ 0.38
VPS4A-202ENST00000562754 DZANK1Q9NVP4 752 aa17.43■□□□□ 0.38
VPS4A-202ENST00000562754 COMMD8Q9NX08 183 aa17.43■□□□□ 0.38
VPS4A-202ENST00000562754 ZDHHC7Q9NXF8 308 aa17.43■□□□□ 0.38
VPS4A-202ENST00000562754 GMIPQ9P107 970 aa17.43■□□□□ 0.38
VPS4A-202ENST00000562754 MYO1AQ9UBC5 1043 aa17.43■□□□□ 0.38
VPS4A-202ENST00000562754 MAGED2Q9UNF1 606 aaPredicted RBP17.43■□□□□ 0.38
VPS4A-202ENST00000562754 SCML2Q9UQR0 700 aa17.43■□□□□ 0.38
VPS4A-202ENST00000562754 PPP2R2CQ9Y2T4 447 aa17.43■□□□□ 0.38
VPS4A-202ENST00000562754 YJEFN3A6XGL0 299 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 E7ENQ6 273 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 PJA2O43164 708 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 TADA3O75528 432 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 POU2F2P09086 479 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 CCDC175P0C221 793 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 SNX16P57768 344 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 GPC5P78333 572 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 SLC6A3Q01959 620 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 TAF10Q12962 218 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 ADAM15Q13444 863 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 COL19A1Q14993 1142 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 TAF5Q15542 800 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 HS1BP3Q53T59 392 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 FAM102AQ5T9C2 384 aaPredicted RBP17.42■□□□□ 0.38
VPS4A-202ENST00000562754 DNAJC24Q6P3W2 148 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 ELMSAN1Q6PJG2 1045 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 SLC26A9Q7LBE3 791 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 SCD5Q86SK9 330 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 KIAA1328Q86T90 577 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 TMC8Q8IU68 726 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 ZDHHC17Q8IUH5 632 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 HS6ST3Q8IZP7 471 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 MICALL1Q8N3F8 863 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 FBXO32Q969P5 355 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 MYRFLQ96LU7 910 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 CDX2Q99626 313 aaPredicted RBP17.42■□□□□ 0.38
VPS4A-202ENST00000562754 LRRC3Q9BY71 257 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 FBXO44Q9H4M3 255 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 SFXN1Q9H9B4 322 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 IL21Q9HBE4 155 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 LUC7LQ9NQ29 371 aaKnown RBP17.42■□□□□ 0.38
VPS4A-202ENST00000562754 METTL5Q9NRN9 209 aaKnown RBP17.42■□□□□ 0.38
VPS4A-202ENST00000562754 WDR35Q9P2L0 1181 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 DPP7Q9UHL4 492 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 ASB3Q9Y575 518 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 DENND4CQ5VZ89 1909 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 ANAPC1Q9H1A4 1944 aa17.42■□□□□ 0.38
VPS4A-202ENST00000562754 BRWD1Q9NSI6 2320 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms