RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 AKAP13Q12802 2813 aa20.2■□□□□ 0.82
VPS35-202ENST00000561713 NR3C1P04150 777 aa20.19■□□□□ 0.82
VPS35-202ENST00000561713 SEC13P55735 322 aa20.19■□□□□ 0.82
VPS35-202ENST00000561713 NCOA4Q13772 614 aa20.19■□□□□ 0.82
VPS35-202ENST00000561713 USP39Q53GS9 565 aaKnown RBP20.19■□□□□ 0.82
VPS35-202ENST00000561713 C2orf27AQ580R0 203 aa20.19■□□□□ 0.82
VPS35-202ENST00000561713 SH3PXD2AQ5TCZ1 1133 aa20.19■□□□□ 0.82
VPS35-202ENST00000561713 PMS2CLQ68D20 193 aa20.19■□□□□ 0.82
VPS35-202ENST00000561713 PARD3BQ8TEW8 1205 aa20.19■□□□□ 0.82
VPS35-202ENST00000561713 USP33Q8TEY7 942 aa20.19■□□□□ 0.82
VPS35-202ENST00000561713 SYAP1Q96A49 352 aaPredicted RBP20.19■□□□□ 0.82
VPS35-202ENST00000561713 TTLL2Q9BWV7 592 aa20.19■□□□□ 0.82
VPS35-202ENST00000561713 ELOVL4Q9GZR5 314 aa20.19■□□□□ 0.82
VPS35-202ENST00000561713 CGNQ9P2M7 1197 aaKnown RBP20.19■□□□□ 0.82
VPS35-202ENST00000561713 ARHGAP26Q9UNA1 814 aa20.19■□□□□ 0.82
VPS35-202ENST00000561713 HPSEQ9Y251 543 aa20.19■□□□□ 0.82
VPS35-202ENST00000561713 ABCA7Q8IZY2 2146 aa20.18■□□□□ 0.82
VPS35-202ENST00000561713 ZNF840PA6NDX5 716 aa20.18■□□□□ 0.82
VPS35-202ENST00000561713 PATE3B3GLJ2 98 aa20.18■□□□□ 0.82
VPS35-202ENST00000561713 K7EQS6 105 aa20.18■□□□□ 0.82
VPS35-202ENST00000561713 STAU1O95793 577 aaKnown RBP20.18■□□□□ 0.82
VPS35-202ENST00000561713 PDIA4P13667 645 aaKnown RBP20.18■□□□□ 0.82
VPS35-202ENST00000561713 SPINK2P20155 84 aa20.18■□□□□ 0.82
VPS35-202ENST00000561713 BCKDHBP21953 392 aa20.18■□□□□ 0.82
VPS35-202ENST00000561713 NDUFA8P51970 172 aa20.18■□□□□ 0.82
VPS35-202ENST00000561713 ZNF252P-AS1Q0IIN9 211 aa20.18■□□□□ 0.82
VPS35-202ENST00000561713 FOXC1Q12948 553 aa20.18■□□□□ 0.82
VPS35-202ENST00000561713 TAF10Q12962 218 aa20.18■□□□□ 0.82
VPS35-202ENST00000561713 NR1H3Q13133 447 aa20.18■□□□□ 0.82
VPS35-202ENST00000561713 ZNF667Q5HYK9 610 aa20.18■□□□□ 0.82
VPS35-202ENST00000561713 DAB2IPQ5VWQ8 1189 aa20.18■□□□□ 0.82
VPS35-202ENST00000561713 CEP135Q66GS9 1140 aa20.18■□□□□ 0.82
VPS35-202ENST00000561713 SPOPLQ6IQ16 392 aa20.18■□□□□ 0.82
VPS35-202ENST00000561713 UNQ6494/PRO21346Q6UXR6 183 aa20.18■□□□□ 0.82
VPS35-202ENST00000561713 FAM35AQ86V20 835 aa20.18■□□□□ 0.82
VPS35-202ENST00000561713 GOLGA5Q8TBA6 731 aa20.18■□□□□ 0.82
VPS35-202ENST00000561713 C8orf48Q96LL4 319 aa20.18■□□□□ 0.82
VPS35-202ENST00000561713 DMAC2Q9NW81 257 aa20.18■□□□□ 0.82
VPS35-202ENST00000561713 WASF3Q9UPY6 502 aa20.18■□□□□ 0.82
VPS35-202ENST00000561713 CPQQ9Y646 472 aa20.18■□□□□ 0.82
VPS35-202ENST00000561713 MYO18AQ92614 2054 aaKnown RBP20.18■□□□□ 0.82
VPS35-202ENST00000561713 LEFTY2O00292 366 aa20.17■□□□□ 0.82
VPS35-202ENST00000561713 KHNYNO15037 678 aaKnown RBP20.17■□□□□ 0.82
VPS35-202ENST00000561713 C4BPAP04003 597 aaKnown RBP20.17■□□□□ 0.82
VPS35-202ENST00000561713 RPN1P04843 607 aaKnown RBP20.17■□□□□ 0.82
VPS35-202ENST00000561713 CCDC130P13994 396 aa20.17■□□□□ 0.82
VPS35-202ENST00000561713 ATICP31939 592 aa20.17■□□□□ 0.82
VPS35-202ENST00000561713 OPRD1P41143 372 aa20.17■□□□□ 0.82
VPS35-202ENST00000561713 NOP14P78316 857 aaKnown RBP20.17■□□□□ 0.82
VPS35-202ENST00000561713 KRT85P78386 507 aa20.17■□□□□ 0.82
VPS35-202ENST00000561713 ANO7Q6IWH7 933 aa20.17■□□□□ 0.82
VPS35-202ENST00000561713 RASSF3Q86WH2 238 aa20.17■□□□□ 0.82
VPS35-202ENST00000561713 KCNK16Q96T55 309 aa20.17■□□□□ 0.82
VPS35-202ENST00000561713 MED10Q9BTT4 135 aa20.17■□□□□ 0.82
VPS35-202ENST00000561713 RNF38Q9H0F5 515 aa20.17■□□□□ 0.82
VPS35-202ENST00000561713 GOLPH3LQ9H4A5 285 aa20.17■□□□□ 0.82
VPS35-202ENST00000561713 KRT82Q9NSB4 513 aa20.17■□□□□ 0.82
VPS35-202ENST00000561713 MAPK8IP1Q9UQF2 711 aa20.17■□□□□ 0.82
VPS35-202ENST00000561713 NUP205Q92621 2012 aa20.17■□□□□ 0.82
VPS35-202ENST00000561713 CDX4O14627 284 aaPredicted RBP20.16■□□□□ 0.82
VPS35-202ENST00000561713 NFATC1O95644 943 aa20.16■□□□□ 0.82
VPS35-202ENST00000561713 TOP3BO95985 862 aaKnown RBP20.16■□□□□ 0.82
VPS35-202ENST00000561713 CMA1P23946 247 aa20.16■□□□□ 0.82
VPS35-202ENST00000561713 SYKP43405 635 aa20.16■□□□□ 0.82
VPS35-202ENST00000561713 GAB4Q2WGN9 574 aa20.16■□□□□ 0.82
VPS35-202ENST00000561713 FILIP1Q7Z7B0 1213 aa20.16■□□□□ 0.82
VPS35-202ENST00000561713 ACOT1Q86TX2 421 aa20.16■□□□□ 0.82
VPS35-202ENST00000561713 CCDC33Q8N5R6 958 aa20.16■□□□□ 0.82
VPS35-202ENST00000561713 MDGA1Q8NFP4 955 aa20.16■□□□□ 0.82
VPS35-202ENST00000561713 FBXO32Q969P5 355 aa20.16■□□□□ 0.82
VPS35-202ENST00000561713 GDPD2Q9HCC8 539 aa20.16■□□□□ 0.82
VPS35-202ENST00000561713 TMEM9BQ9NQ34 198 aa20.16■□□□□ 0.82
VPS35-202ENST00000561713 ZMIZ1Q9ULJ6 1067 aa20.16■□□□□ 0.82
VPS35-202ENST00000561713 IGF2RP11717 2491 aa20.15■□□□□ 0.82
VPS35-202ENST00000561713 OAS1P00973 400 aaKnown RBP20.15■□□□□ 0.82
VPS35-202ENST00000561713 CYP17A1P05093 508 aa20.15■□□□□ 0.82
VPS35-202ENST00000561713 TRIM49P0CI25 452 aa20.15■□□□□ 0.82
VPS35-202ENST00000561713 TRIM49CP0CI26 452 aa20.15■□□□□ 0.82
VPS35-202ENST00000561713 TCF3P15923 654 aa20.15■□□□□ 0.82
VPS35-202ENST00000561713 PIK3CAP42336 1068 aa20.15■□□□□ 0.82
VPS35-202ENST00000561713 IRX4P78413 519 aa20.15■□□□□ 0.82
VPS35-202ENST00000561713 C1orf220Q5T0J3 134 aa20.15■□□□□ 0.82
VPS35-202ENST00000561713 PAQR9Q6ZVX9 377 aa20.15■□□□□ 0.82
VPS35-202ENST00000561713 CYP2U1Q7Z449 544 aa20.15■□□□□ 0.82
VPS35-202ENST00000561713 C11orf74Q86VG3 221 aa20.15■□□□□ 0.82
VPS35-202ENST00000561713 TTC30AQ86WT1 665 aa20.15■□□□□ 0.82
VPS35-202ENST00000561713 SFTPA1Q8IWL2 248 aa20.15■□□□□ 0.82
VPS35-202ENST00000561713 CCDC26Q8TAB7 109 aa20.15■□□□□ 0.82
VPS35-202ENST00000561713 SCAMP5Q8TAC9 235 aa20.15■□□□□ 0.82
VPS35-202ENST00000561713 CNOT6LQ96LI5 555 aaKnown RBP20.15■□□□□ 0.82
VPS35-202ENST00000561713 MMRN2Q9H8L6 949 aa20.15■□□□□ 0.82
VPS35-202ENST00000561713 VRTNQ9H8Y1 702 aa20.15■□□□□ 0.82
VPS35-202ENST00000561713 FAM49BQ9NUQ9 324 aa20.15■□□□□ 0.82
VPS35-202ENST00000561713 CFAP97Q9P2B7 532 aa20.15■□□□□ 0.82
VPS35-202ENST00000561713 MMP17Q9ULZ9 603 aa20.15■□□□□ 0.82
VPS35-202ENST00000561713 THADAQ6YHU6 1953 aa20.15■□□□□ 0.82
VPS35-202ENST00000561713 FAM208BQ5VWN6 2430 aa20.14■□□□□ 0.82
VPS35-202ENST00000561713 ATP8B3O60423 1300 aa20.14■□□□□ 0.81
VPS35-202ENST00000561713 OLFM2O95897 454 aa20.14■□□□□ 0.81
VPS35-202ENST00000561713 MBL2P11226 248 aaPredicted RBP20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms