RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 CFAP97Q9P2B7 532 aa17.48■□□□□ 0.39
CLN3-208ENST00000561505 CGNQ9P2M7 1197 aaKnown RBP17.48■□□□□ 0.39
CLN3-208ENST00000561505 MBD1Q9UIS9 605 aaPredicted RBP17.48■□□□□ 0.39
CLN3-208ENST00000561505 TNRC6BQ9UPQ9 1833 aaKnown RBP17.48■□□□□ 0.39
CLN3-208ENST00000561505 UBE4BO95155 1302 aa17.47■□□□□ 0.39
CLN3-208ENST00000561505 PALM2-AKAP2B1ALY0 433 aaPredicted RBP17.47■□□□□ 0.39
CLN3-208ENST00000561505 HOXC11O43248 304 aaPredicted RBP17.47■□□□□ 0.39
CLN3-208ENST00000561505 PPP6R2O75170 966 aa17.47■□□□□ 0.39
CLN3-208ENST00000561505 ADH1CP00326 375 aa17.47■□□□□ 0.39
CLN3-208ENST00000561505 KCNA4P22459 653 aa17.47■□□□□ 0.39
CLN3-208ENST00000561505 HOXD12P35452 270 aa17.47■□□□□ 0.39
CLN3-208ENST00000561505 SEC13P55735 322 aa17.47■□□□□ 0.39
CLN3-208ENST00000561505 EOGTQ5NDL2 527 aa17.47■□□□□ 0.39
CLN3-208ENST00000561505 SH3PXD2AQ5TCZ1 1133 aa17.47■□□□□ 0.39
CLN3-208ENST00000561505 EMC10Q5UCC4 262 aa17.47■□□□□ 0.39
CLN3-208ENST00000561505 SLC23A3Q6PIS1 610 aa17.47■□□□□ 0.39
CLN3-208ENST00000561505 PDILTQ8N807 584 aa17.47■□□□□ 0.39
CLN3-208ENST00000561505 XXYLT1Q8NBI6 393 aa17.47■□□□□ 0.39
CLN3-208ENST00000561505 B3GALNT2Q8NCR0 500 aa17.47■□□□□ 0.39
CLN3-208ENST00000561505 OR6B3Q8NGW1 331 aa17.47■□□□□ 0.39
CLN3-208ENST00000561505 WHAMMQ8TF30 809 aa17.47■□□□□ 0.39
CLN3-208ENST00000561505 SCFD1Q8WVM8 642 aa17.47■□□□□ 0.39
CLN3-208ENST00000561505 HCN2Q9UL51 889 aa17.47■□□□□ 0.39
CLN3-208ENST00000561505 STARD13Q9Y3M8 1113 aa17.47■□□□□ 0.39
CLN3-208ENST00000561505 COCHO43405 550 aa17.46■□□□□ 0.39
CLN3-208ENST00000561505 GREM1O60565 184 aa17.46■□□□□ 0.39
CLN3-208ENST00000561505 KLF8O95600 359 aaPredicted RBP17.46■□□□□ 0.39
CLN3-208ENST00000561505 APODP05090 189 aa17.46■□□□□ 0.39
CLN3-208ENST00000561505 ADH5P11766 374 aa17.46■□□□□ 0.39
CLN3-208ENST00000561505 TNNI1P19237 187 aa17.46■□□□□ 0.39
CLN3-208ENST00000561505 YWHAQP27348 245 aa17.46■□□□□ 0.39
CLN3-208ENST00000561505 DPP6P42658 865 aa17.46■□□□□ 0.39
CLN3-208ENST00000561505 AMPD3Q01432 767 aa17.46■□□□□ 0.39
CLN3-208ENST00000561505 GAD2Q05329 585 aa17.46■□□□□ 0.39
CLN3-208ENST00000561505 ZNF252P-AS1Q0IIN9 211 aa17.46■□□□□ 0.39
CLN3-208ENST00000561505 LMAN2Q12907 356 aa17.46■□□□□ 0.39
CLN3-208ENST00000561505 FAM26FQ5R3K3 315 aa17.46■□□□□ 0.39
CLN3-208ENST00000561505 LY6G5CQ5SRR4 150 aa17.46■□□□□ 0.39
CLN3-208ENST00000561505 UNQ6494/PRO21346Q6UXR6 183 aa17.46■□□□□ 0.39
CLN3-208ENST00000561505 LPCAT2Q7L5N7 544 aa17.46■□□□□ 0.39
CLN3-208ENST00000561505 HS2ST1Q7LGA3 356 aa17.46■□□□□ 0.39
CLN3-208ENST00000561505 PIP4P1Q86T03 277 aa17.46■□□□□ 0.39
CLN3-208ENST00000561505 SYT12Q8IV01 421 aa17.46■□□□□ 0.39
CLN3-208ENST00000561505 TTC16Q8NEE8 873 aa17.46■□□□□ 0.39
CLN3-208ENST00000561505 NOC3LQ8WTT2 800 aaKnown RBP17.46■□□□□ 0.39
CLN3-208ENST00000561505 POLMQ9NP87 494 aaPredicted RBP17.46■□□□□ 0.39
CLN3-208ENST00000561505 ARHGEF4Q9NR80 690 aa17.46■□□□□ 0.39
CLN3-208ENST00000561505 TMEM74BQ9NUR3 256 aa17.46■□□□□ 0.39
CLN3-208ENST00000561505 SMPD4Q9NXE4 827 aa17.46■□□□□ 0.39
CLN3-208ENST00000561505 FAM208BQ5VWN6 2430 aa17.45■□□□□ 0.38
CLN3-208ENST00000561505 CLDN5O00501 218 aa17.45■□□□□ 0.38
CLN3-208ENST00000561505 DLATP10515 647 aaKnown RBP17.45■□□□□ 0.38
CLN3-208ENST00000561505 DHPSP49366 369 aaPredicted RBP17.45■□□□□ 0.38
CLN3-208ENST00000561505 MYL6P60660 151 aa17.45■□□□□ 0.38
CLN3-208ENST00000561505 BYSLQ13895 437 aaKnown RBP17.45■□□□□ 0.38
CLN3-208ENST00000561505 UNC13DQ70J99 1090 aa17.45■□□□□ 0.38
CLN3-208ENST00000561505 FRMD1Q8N878 549 aa17.45■□□□□ 0.38
CLN3-208ENST00000561505 RDH13Q8NBN7 331 aa17.45■□□□□ 0.38
CLN3-208ENST00000561505 PLEKHO2Q8TD55 490 aa17.45■□□□□ 0.38
CLN3-208ENST00000561505 GATA6Q92908 595 aa17.45■□□□□ 0.38
CLN3-208ENST00000561505 KCNK16Q96T55 309 aa17.45■□□□□ 0.38
CLN3-208ENST00000561505 CSNK1G1Q9HCP0 422 aa17.45■□□□□ 0.38
CLN3-208ENST00000561505 PILRBQ9UKJ0 227 aa17.45■□□□□ 0.38
CLN3-208ENST00000561505 ASCC3Q8N3C0 2202 aaKnown RBP17.44■□□□□ 0.38
CLN3-208ENST00000561505 TMEM8BA6NDV4 472 aa17.44■□□□□ 0.38
CLN3-208ENST00000561505 A8MXQ7 604 aa17.44■□□□□ 0.38
CLN3-208ENST00000561505 C1QTNF9BB2RNN3 333 aa17.44■□□□□ 0.38
CLN3-208ENST00000561505 SPTLC2O15270 562 aa17.44■□□□□ 0.38
CLN3-208ENST00000561505 C1QTNF9P0C862 333 aa17.44■□□□□ 0.38
CLN3-208ENST00000561505 MBL2P11226 248 aaPredicted RBP17.44■□□□□ 0.38
CLN3-208ENST00000561505 TIE1P35590 1138 aa17.44■□□□□ 0.38
CLN3-208ENST00000561505 PTGER3P43115 390 aa17.44■□□□□ 0.38
CLN3-208ENST00000561505 TNNC1P63316 161 aa17.44■□□□□ 0.38
CLN3-208ENST00000561505 SEMA3BQ13214 749 aa17.44■□□□□ 0.38
CLN3-208ENST00000561505 HECTD3Q5T447 861 aa17.44■□□□□ 0.38
CLN3-208ENST00000561505 SHC4Q6S5L8 630 aa17.44■□□□□ 0.38
CLN3-208ENST00000561505 HTR3DQ70Z44 454 aa17.44■□□□□ 0.38
CLN3-208ENST00000561505 CRYBG2Q8N1P7 616 aa17.44■□□□□ 0.38
CLN3-208ENST00000561505 IQUBQ8NA54 791 aa17.44■□□□□ 0.38
CLN3-208ENST00000561505 RLN3Q8WXF3 142 aa17.44■□□□□ 0.38
CLN3-208ENST00000561505 PIGKQ92643 395 aa17.44■□□□□ 0.38
CLN3-208ENST00000561505 SYAP1Q96A49 352 aaPredicted RBP17.44■□□□□ 0.38
CLN3-208ENST00000561505 MAGEF1Q9HAY2 307 aa17.44■□□□□ 0.38
CLN3-208ENST00000561505 CHORDC1Q9UHD1 332 aaPredicted RBP17.44■□□□□ 0.38
CLN3-208ENST00000561505 AKAP13Q12802 2813 aa17.44■□□□□ 0.38
CLN3-208ENST00000561505 MYOFQ9NZM1 2061 aa17.44■□□□□ 0.38
CLN3-208ENST00000561505 IGF2RP11717 2491 aa17.44■□□□□ 0.38
CLN3-208ENST00000561505 PCNX2A6NKB5 2137 aa17.44■□□□□ 0.38
CLN3-208ENST00000561505 PVALEFA0A1B0GWK0 134 aa17.43■□□□□ 0.38
CLN3-208ENST00000561505 CLIC2O15247 247 aa17.43■□□□□ 0.38
CLN3-208ENST00000561505 TULP3O75386 442 aa17.43■□□□□ 0.38
CLN3-208ENST00000561505 C4BPAP04003 597 aaKnown RBP17.43■□□□□ 0.38
CLN3-208ENST00000561505 AP3M2P53677 418 aa17.43■□□□□ 0.38
CLN3-208ENST00000561505 ASIC1P78348 528 aa17.43■□□□□ 0.38
CLN3-208ENST00000561505 PREPLQ4J6C6 727 aaPredicted RBP17.43■□□□□ 0.38
CLN3-208ENST00000561505 TRIM61Q5EBN2 209 aa17.43■□□□□ 0.38
CLN3-208ENST00000561505 FAM35AQ86V20 835 aa17.43■□□□□ 0.38
CLN3-208ENST00000561505 FUKQ8N0W3 1084 aa17.43■□□□□ 0.38
CLN3-208ENST00000561505 ZMIZ2Q8NF64 920 aa17.43■□□□□ 0.38
CLN3-208ENST00000561505 SCAMP5Q8TAC9 235 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms