RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 POTEHQ6S545 545 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 GPRIN1Q7Z2K8 1008 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 TADA2BQ86TJ2 420 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 ARID3BQ8IVW6 561 aaPredicted RBP13.7□□□□□ -0.22
NEDD8-208ENST00000560427 MAB21L3Q8N8X9 362 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 STK32AQ8WU08 396 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 SLC35F5Q8WV83 523 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 EDAQ92838 391 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 SECISBP2LQ93073 1101 aaKnown RBP13.7□□□□□ -0.22
NEDD8-208ENST00000560427 IQCDQ96DY2 449 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 SPAG5Q96R06 1193 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 CDK5RAP1Q96SZ6 601 aaKnown RBP13.7□□□□□ -0.22
NEDD8-208ENST00000560427 LRRC4Q9HBW1 653 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 CYLDQ9NQC7 956 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 CLIC5Q9NZA1 410 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 MYO6Q9UM54 1294 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 ARHGAP26Q9UNA1 814 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 OBSL1O75147 1896 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 CUL9Q8IWT3 2517 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 EPHB6O15197 1021 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 CKMP06732 381 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 CLCN1P35523 988 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 STAT1P42224 750 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 GPD2P43304 727 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 ACADSBP45954 432 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 RPL34P49207 117 aaKnown RBP13.69□□□□□ -0.22
NEDD8-208ENST00000560427 TKTL1P51854 596 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 SLC7A9P82251 487 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 SIGLEC14Q08ET2 396 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 FCHO2Q0JRZ9 810 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 NR1I3Q14994 352 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 FIGNQ5HY92 759 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 HECTD3Q5T447 861 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 PM20D1Q6GTS8 502 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 TANGO2Q6ICL3 276 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 KLHDC10Q6PID8 442 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 DDX42Q86XP3 938 aaKnown RBP eCLIP13.69□□□□□ -0.22
NEDD8-208ENST00000560427 ZNF677Q86XU0 584 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 MFSD6LQ8IWD5 586 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 SIX6OS1Q8N1H7 587 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 ZNF276Q8N554 614 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 UBA3Q8TBC4 463 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 RSAD2Q8WXG1 361 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 DNASE1L2Q92874 299 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 KXD1Q9BQD3 176 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 LHX5Q9H2C1 402 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 TRPC7Q9HCX4 862 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 CNGB3Q9NQW8 809 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 TDP1Q9NUW8 608 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 GMIPQ9P107 970 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 CEP83Q9Y592 693 aa13.69□□□□□ -0.22
NEDD8-208ENST00000560427 C5orf42Q9H799 3197 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 C2orf78A6NCI8 922 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 HEPACAM2A8MVW5 462 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 TEX33O43247 280 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 SART1O43290 800 aaKnown RBP13.68□□□□□ -0.22
NEDD8-208ENST00000560427 FBXO21O94952 628 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 PRAMEF12O95522 483 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 ZBED1O96006 694 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 CCDC172P0C7W6 258 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 CYP11B1P15538 503 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 HDCP19113 662 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 KRT9P35527 623 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 SOX5P35711 763 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 UBASH3AP57075 661 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 SNX16P57768 344 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 PLCB2Q00722 1185 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 VITQ6UXI7 678 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 CACNA2D4Q7Z3S7 1137 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 SLC47A2Q86VL8 602 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 YAF2Q8IY57 180 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 BPIFB1Q8TDL5 484 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 IRGQQ8WZA9 623 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 USP13Q92995 863 aaPredicted RBP13.68□□□□□ -0.22
NEDD8-208ENST00000560427 NAP1L5Q96NT1 182 aaPredicted RBP13.68□□□□□ -0.22
NEDD8-208ENST00000560427 NOX5Q96PH1 765 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 ANP32EQ9BTT0 268 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 TRMT61BQ9BVS5 477 aaKnown RBP13.68□□□□□ -0.22
NEDD8-208ENST00000560427 EDEM3Q9BZQ6 932 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 NLRC4Q9NPP4 1024 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 TRPV5Q9NQA5 729 aa13.68□□□□□ -0.22
NEDD8-208ENST00000560427 THG1LQ9NWX6 298 aaKnown RBP13.68□□□□□ -0.22
NEDD8-208ENST00000560427 DENND4CQ5VZ89 1909 aa13.67□□□□□ -0.22
NEDD8-208ENST00000560427 MUC3AQ02505 3323 aa13.67□□□□□ -0.22
NEDD8-208ENST00000560427 TULP2O00295 520 aa13.67□□□□□ -0.22
NEDD8-208ENST00000560427 CBFA2T2O43439 604 aa13.67□□□□□ -0.22
NEDD8-208ENST00000560427 TLR5O60602 858 aa13.67□□□□□ -0.22
NEDD8-208ENST00000560427 LSM8O95777 96 aaKnown RBP13.67□□□□□ -0.22
NEDD8-208ENST00000560427 ABL1P00519 1130 aa13.67□□□□□ -0.22
NEDD8-208ENST00000560427 PNMA6AP0CW24 399 aaPredicted RBP13.67□□□□□ -0.22
NEDD8-208ENST00000560427 RALAP11233 206 aa13.67□□□□□ -0.22
NEDD8-208ENST00000560427 VIPR2P41587 438 aa13.67□□□□□ -0.22
NEDD8-208ENST00000560427 ADIGQ0VDE8 80 aa13.67□□□□□ -0.22
NEDD8-208ENST00000560427 USP4Q13107 963 aa13.67□□□□□ -0.22
NEDD8-208ENST00000560427 ARHGAP29Q52LW3 1261 aa13.67□□□□□ -0.22
NEDD8-208ENST00000560427 PMF1Q6P1K2 205 aa13.67□□□□□ -0.22
NEDD8-208ENST00000560427 DENND1BQ6P3S1 775 aa13.67□□□□□ -0.22
NEDD8-208ENST00000560427 ARL14EPQ8N8R7 260 aaPredicted RBP13.67□□□□□ -0.22
NEDD8-208ENST00000560427 EPS8L1Q8TE68 723 aa13.67□□□□□ -0.22
NEDD8-208ENST00000560427 KHSRPQ92945 711 aaKnown RBP eCLIP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms