RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 DMAP1Q9NPF5 467 aaPredicted RBP18.8■□□□□ 0.6
HDDC3-205ENST00000559898 OSER1Q9NX31 292 aa18.8■□□□□ 0.6
HDDC3-205ENST00000559898 PCDHA5Q9Y5H7 936 aa18.8■□□□□ 0.6
HDDC3-205ENST00000559898 TBX18O95935 607 aa18.79■□□□□ 0.6
HDDC3-205ENST00000559898 CD44P16070 742 aaKnown RBP18.79■□□□□ 0.6
HDDC3-205ENST00000559898 MCCD1P59942 119 aaPredicted RBP18.79■□□□□ 0.6
HDDC3-205ENST00000559898 INCA1Q0VD86 236 aa18.79■□□□□ 0.6
HDDC3-205ENST00000559898 ZNF394Q53GI3 561 aa18.79■□□□□ 0.6
HDDC3-205ENST00000559898 ANKRD40Q6AI12 368 aa18.79■□□□□ 0.6
HDDC3-205ENST00000559898 CLEC20AQ6ZU45 233 aa18.79■□□□□ 0.6
HDDC3-205ENST00000559898 INTS8Q75QN2 995 aaKnown RBP18.79■□□□□ 0.6
HDDC3-205ENST00000559898 ADGRG2Q8IZP9 1017 aa18.79■□□□□ 0.6
HDDC3-205ENST00000559898 RPLP0P6Q8NHW5 317 aa18.79■□□□□ 0.6
HDDC3-205ENST00000559898 TAF4BQ92750 862 aa18.79■□□□□ 0.6
HDDC3-205ENST00000559898 TNIP3Q96KP6 325 aa18.79■□□□□ 0.6
HDDC3-205ENST00000559898 SLITRK1Q96PX8 696 aa18.79■□□□□ 0.6
HDDC3-205ENST00000559898 HHIPQ96QV1 700 aa18.79■□□□□ 0.6
HDDC3-205ENST00000559898 CSNK1G1Q9HCP0 422 aa18.79■□□□□ 0.6
HDDC3-205ENST00000559898 FAM92AA1XBS5 289 aa18.78■□□□□ 0.6
HDDC3-205ENST00000559898 K7EQS6 105 aa18.78■□□□□ 0.6
HDDC3-205ENST00000559898 GADD45BO75293 160 aaPredicted RBP18.78■□□□□ 0.6
HDDC3-205ENST00000559898 RTN3O95197 1032 aaPredicted RBP18.78■□□□□ 0.6
HDDC3-205ENST00000559898 ZDHHC11BP0C7U3 371 aa18.78■□□□□ 0.6
HDDC3-205ENST00000559898 IRF1P10914 325 aa18.78■□□□□ 0.6
HDDC3-205ENST00000559898 KRT13P13646 458 aa18.78■□□□□ 0.6
HDDC3-205ENST00000559898 NRLP54845 237 aa18.78■□□□□ 0.6
HDDC3-205ENST00000559898 SEC13P55735 322 aa18.78■□□□□ 0.6
HDDC3-205ENST00000559898 SIM2Q14190 667 aaPredicted RBP18.78■□□□□ 0.6
HDDC3-205ENST00000559898 CBWD6Q4V339 395 aa18.78■□□□□ 0.6
HDDC3-205ENST00000559898 CBWD3Q5JTY5 395 aa18.78■□□□□ 0.6
HDDC3-205ENST00000559898 CBWD5Q5RIA9 395 aa18.78■□□□□ 0.6
HDDC3-205ENST00000559898 RHBDF2Q6PJF5 856 aa18.78■□□□□ 0.6
HDDC3-205ENST00000559898 LONP2Q86WA8 852 aa18.78■□□□□ 0.6
HDDC3-205ENST00000559898 SYNPOQ8N3V7 929 aa18.78■□□□□ 0.6
HDDC3-205ENST00000559898 NMUR1Q9HB89 426 aa18.78■□□□□ 0.6
HDDC3-205ENST00000559898 TMEM8AQ9HCN3 771 aa18.78■□□□□ 0.6
HDDC3-205ENST00000559898 ZDHHC4Q9NPG8 344 aa18.78■□□□□ 0.6
HDDC3-205ENST00000559898 NUDT5Q9UKK9 219 aa18.78■□□□□ 0.6
HDDC3-205ENST00000559898 RALGAPA1Q6GYQ0 2036 aa18.78■□□□□ 0.6
HDDC3-205ENST00000559898 MDM4O15151 490 aa18.77■□□□□ 0.6
HDDC3-205ENST00000559898 CYP26A1O43174 497 aa18.77■□□□□ 0.6
HDDC3-205ENST00000559898 CILPO75339 1184 aa18.77■□□□□ 0.6
HDDC3-205ENST00000559898 KIF20AO95235 890 aa18.77■□□□□ 0.6
HDDC3-205ENST00000559898 CHRM1P11229 460 aaPredicted RBP18.77■□□□□ 0.6
HDDC3-205ENST00000559898 SPEM2Q0P670 501 aa18.77■□□□□ 0.6
HDDC3-205ENST00000559898 DHCR24Q15392 516 aa18.77■□□□□ 0.6
HDDC3-205ENST00000559898 EDRF1Q3B7T1 1238 aa18.77■□□□□ 0.6
HDDC3-205ENST00000559898 PPP1R26Q5T8A7 1209 aaPredicted RBP18.77■□□□□ 0.6
HDDC3-205ENST00000559898 ZNF658Q5TYW1 1059 aaPredicted RBP18.77■□□□□ 0.6
HDDC3-205ENST00000559898 WDR5BQ86VZ2 330 aa18.77■□□□□ 0.6
HDDC3-205ENST00000559898 UNC93AQ86WB7 457 aa18.77■□□□□ 0.6
HDDC3-205ENST00000559898 SPATA20Q8TB22 786 aa18.77■□□□□ 0.6
HDDC3-205ENST00000559898 CYFIP2Q96F07 1278 aa18.77■□□□□ 0.6
HDDC3-205ENST00000559898 NIF3L1Q9GZT8 377 aa18.77■□□□□ 0.6
HDDC3-205ENST00000559898 ATP8B3O60423 1300 aa18.76■□□□□ 0.59
HDDC3-205ENST00000559898 P4HA1P13674 534 aa18.76■□□□□ 0.59
HDDC3-205ENST00000559898 HNRNPLP14866 589 aaKnown RBP eCLIP18.76■□□□□ 0.59
HDDC3-205ENST00000559898 DRD1P21728 446 aa18.76■□□□□ 0.59
HDDC3-205ENST00000559898 BMP6P22004 513 aa18.76■□□□□ 0.59
HDDC3-205ENST00000559898 RPL13P26373 211 aaKnown RBP18.76■□□□□ 0.59
HDDC3-205ENST00000559898 PPP3CCP48454 512 aa18.76■□□□□ 0.59
HDDC3-205ENST00000559898 BECN1Q14457 450 aa18.76■□□□□ 0.59
HDDC3-205ENST00000559898 PPP2R5DQ14738 602 aa18.76■□□□□ 0.59
HDDC3-205ENST00000559898 CCDC6Q16204 474 aa18.76■□□□□ 0.59
HDDC3-205ENST00000559898 RSPO4Q2I0M5 234 aaPredicted RBP18.76■□□□□ 0.59
HDDC3-205ENST00000559898 HECTD3Q5T447 861 aa18.76■□□□□ 0.59
HDDC3-205ENST00000559898 EMC10Q5UCC4 262 aa18.76■□□□□ 0.59
HDDC3-205ENST00000559898 SNX30Q5VWJ9 437 aa18.76■□□□□ 0.59
HDDC3-205ENST00000559898 KRT39Q6A163 491 aa18.76■□□□□ 0.59
HDDC3-205ENST00000559898 BBS7Q8IWZ6 715 aa18.76■□□□□ 0.59
HDDC3-205ENST00000559898 ZC3H3Q8IXZ2 948 aaKnown RBP18.76■□□□□ 0.59
HDDC3-205ENST00000559898 P2RY11Q96G91 374 aa18.76■□□□□ 0.59
HDDC3-205ENST00000559898 HNRNPABQ99729 332 aaKnown RBP18.76■□□□□ 0.59
HDDC3-205ENST00000559898 SDK1Q7Z5N4 2213 aa18.76■□□□□ 0.59
HDDC3-205ENST00000559898 TRIM24O15164 1050 aa18.75■□□□□ 0.59
HDDC3-205ENST00000559898 GREM1O60565 184 aa18.75■□□□□ 0.59
HDDC3-205ENST00000559898 NFATC1O95644 943 aa18.75■□□□□ 0.59
HDDC3-205ENST00000559898 FAM200BP0CF97 657 aa18.75■□□□□ 0.59
HDDC3-205ENST00000559898 PFKLP17858 780 aa18.75■□□□□ 0.59
HDDC3-205ENST00000559898 MXI1P50539 228 aa18.75■□□□□ 0.59
HDDC3-205ENST00000559898 C2orf27AQ580R0 203 aa18.75■□□□□ 0.59
HDDC3-205ENST00000559898 LY6G5CQ5SRR4 150 aa18.75■□□□□ 0.59
HDDC3-205ENST00000559898 FAM160A2Q8N612 972 aaPredicted RBP18.75■□□□□ 0.59
HDDC3-205ENST00000559898 SLC4A11Q8NBS3 891 aa18.75■□□□□ 0.59
HDDC3-205ENST00000559898 OVCA2Q8WZ82 227 aa18.75■□□□□ 0.59
HDDC3-205ENST00000559898 NT5C1AQ9BXI3 368 aa18.75■□□□□ 0.59
HDDC3-205ENST00000559898 EHD2Q9NZN4 543 aa18.75■□□□□ 0.59
HDDC3-205ENST00000559898 MAN1B1Q9UKM7 699 aa18.75■□□□□ 0.59
HDDC3-205ENST00000559898 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.75■□□□□ 0.59
HDDC3-205ENST00000559898 CEP250Q9BV73 2442 aa18.74■□□□□ 0.59
HDDC3-205ENST00000559898 A0A1W2PQH9 124 aa18.74■□□□□ 0.59
HDDC3-205ENST00000559898 DCLK1O15075 740 aa18.74■□□□□ 0.59
HDDC3-205ENST00000559898 CETN3O15182 167 aa18.74■□□□□ 0.59
HDDC3-205ENST00000559898 ACO1P21399 889 aaKnown RBP18.74■□□□□ 0.59
HDDC3-205ENST00000559898 PDE6CP51160 858 aa18.74■□□□□ 0.59
HDDC3-205ENST00000559898 RAD23BP54727 409 aa18.74■□□□□ 0.59
HDDC3-205ENST00000559898 NUCB2P80303 420 aa18.74■□□□□ 0.59
HDDC3-205ENST00000559898 KDSRQ06136 332 aa18.74■□□□□ 0.59
HDDC3-205ENST00000559898 DCAF17Q5H9S7 520 aaPredicted RBP18.74■□□□□ 0.59
HDDC3-205ENST00000559898 SCD5Q86SK9 330 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms