RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 ARSEP51690 589 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 MAP3K7CLP57077 242 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 MRPS5P82675 430 aaKnown RBP13.28□□□□□ -0.28
USP3-213ENST00000559711 TLE2Q04725 743 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 ADIGQ0VDE8 80 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 MAPRE1Q15691 268 aaKnown RBP13.28□□□□□ -0.28
USP3-213ENST00000559711 TCTN1Q2MV58 587 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 SMTNL2Q2TAL5 461 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 RAB6CQ53S08 254 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 RAB41Q5JT25 222 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 KRT222Q8N1A0 295 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 PIAS4Q8N2W9 510 aaPredicted RBP13.28□□□□□ -0.28
USP3-213ENST00000559711 MREGQ8N565 214 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 KCTD6Q8NC69 237 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 ZMIZ2Q8NF64 920 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 GRK7Q8WTQ7 553 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 FAM172AQ8WUF8 416 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 TEKT4Q8WW24 435 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 SMARCD1Q96GM5 515 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 ZNF333Q96JL9 665 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 GDAP1L1Q96MZ0 367 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 TBCBQ99426 244 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 RAB6CQ9H0N0 254 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 LRRC4Q9HBW1 653 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 HPCAL4Q9UM19 191 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 SPDYE4A6NLX3 237 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 HHLA1C9JL84 531 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 HOXA2O43364 376 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 FBXO21O94952 628 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 MATKP42679 507 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 HDAC4P56524 1084 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 ATP11AP98196 1134 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 RNASELQ05823 741 aaKnown RBP13.28□□□□□ -0.28
USP3-213ENST00000559711 SNX1Q13596 522 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 HLTFQ14527 1009 aaKnown RBP eCLIP13.28□□□□□ -0.28
USP3-213ENST00000559711 KAZNQ674X7 775 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 BBS12Q6ZW61 710 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 OR10T2Q8NGX3 314 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 NT5C3BQ969T7 300 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 MYLPFQ96A32 169 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 FAM193BQ96PV7 902 aaPredicted RBP13.28□□□□□ -0.28
USP3-213ENST00000559711 NEUROG2Q9H2A3 272 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 DPH5Q9H2P9 285 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 TMEM30AQ9NV96 361 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.28□□□□□ -0.28
USP3-213ENST00000559711 NEU2Q9Y3R4 380 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.27□□□□□ -0.29
USP3-213ENST00000559711 TRAPPC3O43617 180 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 LIASO43766 372 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 OAZ2O95190 189 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 OR1G1P47890 313 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 NDUFV1P49821 464 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 TKTL1P51854 596 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 CACNA2D1P54289 1103 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 YWHAZP63104 245 aaKnown RBP13.27□□□□□ -0.29
USP3-213ENST00000559711 TSPY1Q01534 308 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 YWHAHQ04917 246 aaPredicted RBP13.27□□□□□ -0.29
USP3-213ENST00000559711 CDO1Q16878 200 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 STRADAQ7RTN6 431 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 CTU1Q7Z7A3 348 aaKnown RBP13.27□□□□□ -0.29
USP3-213ENST00000559711 LRRTM3Q86VH5 581 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 VSIG1Q86XK7 387 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 ABI1Q8IZP0 508 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 SIX6OS1Q8N1H7 587 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 SCLYQ96I15 445 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 SLC2A13Q96QE2 648 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 KCNK16Q96T55 309 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 FRMD8P1Q9BZ68 369 aaPredicted RBP13.27□□□□□ -0.29
USP3-213ENST00000559711 FAM129AQ9BZQ8 928 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 TRIM31Q9BZY9 425 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 ACBD3Q9H3P7 528 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 NRDE2Q9H7Z3 1164 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 NGRNQ9NPE2 291 aaKnown RBP13.27□□□□□ -0.29
USP3-213ENST00000559711 CNGB3Q9NQW8 809 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 ZDHHC18Q9NUE0 388 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 TMLHEQ9NVH6 421 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 GRHL1Q9NZI5 618 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 DNAJB4Q9UDY4 337 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 DRG1Q9Y295 367 aaKnown RBP13.27□□□□□ -0.29
USP3-213ENST00000559711 SNX24Q9Y343 169 aa13.27□□□□□ -0.29
USP3-213ENST00000559711 SYN3O14994 580 aa13.26□□□□□ -0.29
USP3-213ENST00000559711 MDM4O15151 490 aa13.26□□□□□ -0.29
USP3-213ENST00000559711 DAB1O75553 588 aa13.26□□□□□ -0.29
USP3-213ENST00000559711 GAS8O95995 478 aa13.26□□□□□ -0.29
USP3-213ENST00000559711 CD48P09326 243 aa13.26□□□□□ -0.29
USP3-213ENST00000559711 TFE3P19532 575 aaPredicted RBP13.26□□□□□ -0.29
USP3-213ENST00000559711 NOS2P35228 1153 aa13.26□□□□□ -0.29
USP3-213ENST00000559711 HSPA9P38646 679 aaKnown RBP13.26□□□□□ -0.29
USP3-213ENST00000559711 RPL21P46778 160 aaKnown RBP13.26□□□□□ -0.29
USP3-213ENST00000559711 CCL23P55773 120 aa13.26□□□□□ -0.29
USP3-213ENST00000559711 LMNB2Q03252 620 aa13.26□□□□□ -0.29
USP3-213ENST00000559711 PTK6Q13882 451 aa13.26□□□□□ -0.29
USP3-213ENST00000559711 PDK2Q15119 407 aa13.26□□□□□ -0.29
USP3-213ENST00000559711 KCTD19Q17RG1 926 aaPredicted RBP13.26□□□□□ -0.29
USP3-213ENST00000559711 SLC25A52Q3SY17 297 aa13.26□□□□□ -0.29
USP3-213ENST00000559711 TRIM60Q495X7 471 aa13.26□□□□□ -0.29
USP3-213ENST00000559711 FBXO46Q6PJ61 603 aaPredicted RBP13.26□□□□□ -0.29
USP3-213ENST00000559711 ZDHHC24Q6UX98 284 aa13.26□□□□□ -0.29
USP3-213ENST00000559711 BNIPLQ7Z465 357 aa13.26□□□□□ -0.29
USP3-213ENST00000559711 DEFB106AQ8N104 65 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms