RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 BMXP51813 675 aa8.78□□□□□ -1
USP3-211ENST00000559257 POU6F2P78424 691 aaPredicted RBP8.78□□□□□ -1
USP3-211ENST00000559257 RAPGEF1Q13905 1077 aa8.78□□□□□ -1
USP3-211ENST00000559257 PPM1LQ5SGD2 360 aa8.78□□□□□ -1
USP3-211ENST00000559257 POTEBQ6S5H4 581 aa8.78□□□□□ -1
USP3-211ENST00000559257 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.78□□□□□ -1
USP3-211ENST00000559257 PIK3AP1Q6ZUJ8 805 aa8.78□□□□□ -1
USP3-211ENST00000559257 DPP9Q86TI2 863 aa8.78□□□□□ -1
USP3-211ENST00000559257 FBXO11Q86XK2 927 aa8.78□□□□□ -1
USP3-211ENST00000559257 HPS6Q86YV9 775 aa8.78□□□□□ -1
USP3-211ENST00000559257 TEX47Q8TBZ9 253 aa8.78□□□□□ -1
USP3-211ENST00000559257 FAM89AQ96GI7 184 aa8.78□□□□□ -1
USP3-211ENST00000559257 GMLQ99445 158 aa8.78□□□□□ -1
USP3-211ENST00000559257 MNTQ99583 582 aa8.78□□□□□ -1
USP3-211ENST00000559257 NOC4LQ9BVI4 516 aaKnown RBP8.78□□□□□ -1
USP3-211ENST00000559257 CCDC113Q9H0I3 377 aa8.78□□□□□ -1
USP3-211ENST00000559257 FAM8A1Q9UBU6 413 aa8.78□□□□□ -1
USP3-211ENST00000559257 REV1Q9UBZ9 1251 aa8.78□□□□□ -1
USP3-211ENST00000559257 DIMT1Q9UNQ2 313 aaKnown RBP8.78□□□□□ -1
USP3-211ENST00000559257 WBP11Q9Y2W2 641 aaKnown RBP8.78□□□□□ -1
USP3-211ENST00000559257 SNX8Q9Y5X2 465 aa8.78□□□□□ -1
USP3-211ENST00000559257 NRKQ7Z2Y5 1582 aa8.78□□□□□ -1
USP3-211ENST00000559257 MYH10P35580 1976 aa8.77□□□□□ -1
USP3-211ENST00000559257 A0A1W2PQJ5 194 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 VWA5AO00534 786 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 RASGRF2O14827 1237 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 POP4O95707 220 aaKnown RBP8.77□□□□□ -1.01
USP3-211ENST00000559257 BAG2O95816 211 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 ASS1P00966 412 aaKnown RBP8.77□□□□□ -1.01
USP3-211ENST00000559257 DBTP11182 482 aaKnown RBP8.77□□□□□ -1.01
USP3-211ENST00000559257 PCSK2P16519 638 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 LRPAP1P30533 357 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 HNRNPH3P31942 346 aaKnown RBP8.77□□□□□ -1.01
USP3-211ENST00000559257 PGM1P36871 562 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 NUBP1P53384 320 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 MYBPC1Q00872 1141 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 BTKQ06187 659 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 TLR1Q15399 786 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 FUT11Q495W5 492 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 FIGNQ5HY92 759 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 TCHHL1Q5QJ38 904 aaPredicted RBP8.77□□□□□ -1.01
USP3-211ENST00000559257 KYAT3Q6YP21 454 aaKnown RBP8.77□□□□□ -1.01
USP3-211ENST00000559257 UNC5AQ6ZN44 842 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 CEP68Q76N32 757 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 GSTA5Q7RTV2 222 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 RIC3Q7Z5B4 369 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 NLRX1Q86UT6 975 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 ANKLE2Q86XL3 938 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 KLHL7Q8IXQ5 586 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 CCDC116Q8IYX3 515 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 MB21D1Q8N884 522 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 Q8N9G6 341 aaPredicted RBP8.77□□□□□ -1.01
USP3-211ENST00000559257 RAB3IL1Q8TBN0 382 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 SPATA18Q8TC71 538 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 DHX38Q92620 1227 aaKnown RBP8.77□□□□□ -1.01
USP3-211ENST00000559257 C11orf24Q96F05 449 aaPredicted RBP8.77□□□□□ -1.01
USP3-211ENST00000559257 RMND5BQ96G75 393 aaPredicted RBP8.77□□□□□ -1.01
USP3-211ENST00000559257 DOK1Q99704 481 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 C9orf16Q9BUW7 83 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 TTYH3Q9C0H2 523 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 MRM3Q9HC36 420 aaKnown RBP8.77□□□□□ -1.01
USP3-211ENST00000559257 MBIPQ9NS73 344 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 ENOPH1Q9UHY7 261 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 APPL1Q9UKG1 709 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 STRIP2Q9ULQ0 834 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 PPM1HQ9ULR3 514 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 EIF3LQ9Y262 564 aaKnown RBP8.77□□□□□ -1.01
USP3-211ENST00000559257 KLF2Q9Y5W3 355 aaPredicted RBP8.77□□□□□ -1.01
USP3-211ENST00000559257 TLDC2A0PJX2 215 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 SH3D21A4FU49 640 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 C16orf96A6NNT2 1141 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 LGALS16A8MUM7 142 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 KRIT1O00522 736 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 E2F3O00716 465 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 TXNDC9O14530 226 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 TOR1AO14656 332 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 ZNF263O14978 683 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 DAPK3O43293 454 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 GNRH1P01148 92 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 PGK2P07205 417 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 ATF4P18848 351 aaPredicted RBP8.77□□□□□ -1.01
USP3-211ENST00000559257 MUTP22033 750 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 NAMPTP43490 491 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 HK2P52789 917 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 MYL6P60660 151 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 IL9RQ01113 521 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 CSTF3Q12996 717 aaKnown RBP8.77□□□□□ -1.01
USP3-211ENST00000559257 IDI1Q13907 227 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 GALNT3Q14435 633 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 LRRC14Q15048 493 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 PTPAQ15257 358 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 DALRD3Q5D0E6 543 aaKnown RBP8.77□□□□□ -1.01
USP3-211ENST00000559257 TCP11X2Q5H9J9 407 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 RIPOR1Q6ZS17 1223 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 SLFN11Q7Z7L1 901 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 CCDC84Q86UT8 332 aaPredicted RBP8.77□□□□□ -1.01
USP3-211ENST00000559257 LRRC71Q8N4P6 559 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 MAGEB6Q8N7X4 407 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 PDPRQ8NCN5 879 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 OR7D4Q8NG98 312 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms