RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 FAM83CQ9BQN1 747 aa14.49□□□□□ -0.09
SHMT2-219ENST00000555563 CRACR2AQ9BSW2 395 aa14.49□□□□□ -0.09
SHMT2-219ENST00000555563 RNF38Q9H0F5 515 aa14.49□□□□□ -0.09
SHMT2-219ENST00000555563 FBXO44Q9H4M3 255 aa14.49□□□□□ -0.09
SHMT2-219ENST00000555563 HPS4Q9NQG7 708 aa14.49□□□□□ -0.09
SHMT2-219ENST00000555563 GKN1Q9NS71 199 aa14.49□□□□□ -0.09
SHMT2-219ENST00000555563 SMPD4Q9NXE4 827 aa14.49□□□□□ -0.09
SHMT2-219ENST00000555563 DLGAP2Q9P1A6 1054 aa14.49□□□□□ -0.09
SHMT2-219ENST00000555563 CHORDC1Q9UHD1 332 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-219ENST00000555563 TSPAN16Q9UKR8 245 aa14.49□□□□□ -0.09
SHMT2-219ENST00000555563 PCDHB4Q9Y5E5 795 aa14.49□□□□□ -0.09
SHMT2-219ENST00000555563 FAM170BA6NMN3 283 aa14.48□□□□□ -0.09
SHMT2-219ENST00000555563 O00370 1275 aa14.48□□□□□ -0.09
SHMT2-219ENST00000555563 COCHO43405 550 aa14.48□□□□□ -0.09
SHMT2-219ENST00000555563 PAEPP09466 180 aa14.48□□□□□ -0.09
SHMT2-219ENST00000555563 ARSAP15289 507 aa14.48□□□□□ -0.09
SHMT2-219ENST00000555563 TCF3P15923 654 aa14.48□□□□□ -0.09
SHMT2-219ENST00000555563 CTHP32929 405 aa14.48□□□□□ -0.09
SHMT2-219ENST00000555563 TUBP50607 506 aa14.48□□□□□ -0.09
SHMT2-219ENST00000555563 SLC7A9P82251 487 aa14.48□□□□□ -0.09
SHMT2-219ENST00000555563 APBA1Q02410 837 aa14.48□□□□□ -0.09
SHMT2-219ENST00000555563 MAN2A1Q16706 1144 aa14.48□□□□□ -0.09
SHMT2-219ENST00000555563 CT47A1Q5JQC4 288 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-219ENST00000555563 HECTD3Q5T447 861 aa14.48□□□□□ -0.09
SHMT2-219ENST00000555563 SNX30Q5VWJ9 437 aa14.48□□□□□ -0.09
SHMT2-219ENST00000555563 CC2D1AQ6P1N0 951 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-219ENST00000555563 C11orf57Q6ZUT1 292 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-219ENST00000555563 ANKRD52Q8NB46 1076 aa14.48□□□□□ -0.09
SHMT2-219ENST00000555563 DTWD2Q8NBA8 298 aa14.48□□□□□ -0.09
SHMT2-219ENST00000555563 RBBP8NLQ8NC74 664 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-219ENST00000555563 TFAP2BQ92481 460 aa14.48□□□□□ -0.09
SHMT2-219ENST00000555563 FAM3CQ92520 227 aa14.48□□□□□ -0.09
SHMT2-219ENST00000555563 OSBPL6Q9BZF3 934 aa14.48□□□□□ -0.09
SHMT2-219ENST00000555563 EBF3Q9H4W6 596 aa14.48□□□□□ -0.09
SHMT2-219ENST00000555563 CCSER2Q9H7U1 834 aa14.48□□□□□ -0.09
SHMT2-219ENST00000555563 NDRG2Q9UN36 371 aaKnown RBP14.48□□□□□ -0.09
SHMT2-219ENST00000555563 SCML2Q9UQR0 700 aa14.48□□□□□ -0.09
SHMT2-219ENST00000555563 MRPS17Q9Y2R5 130 aaKnown RBP14.48□□□□□ -0.09
SHMT2-219ENST00000555563 CPQQ9Y646 472 aa14.48□□□□□ -0.09
SHMT2-219ENST00000555563 WNT6Q9Y6F9 365 aa14.48□□□□□ -0.09
SHMT2-219ENST00000555563 GTPBP10A4D1E9 387 aaKnown RBP14.47□□□□□ -0.09
SHMT2-219ENST00000555563 OTOL1A6NHN0 477 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-219ENST00000555563 KCNJ18B7U540 433 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 SPECC1L-ADORA2AF8WAN1 911 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 RNF225M0QZC1 329 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-219ENST00000555563 LEFTY2O00292 366 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 MAN2B1O00754 1011 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 CALCAP01258 141 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 MBL2P11226 248 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-219ENST00000555563 VDRP11473 427 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 SLC9A1P19634 815 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 BRD2P25440 801 aaKnown RBP14.47□□□□□ -0.09
SHMT2-219ENST00000555563 KIF11P52732 1056 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 ZNF132P52740 706 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 BCAT1P54687 386 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 MLLT6P55198 1093 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-219ENST00000555563 KCNJ12Q14500 433 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 PDGFRLQ15198 375 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 ITPRIPL2Q3MIP1 535 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 MIIPQ5JXC2 388 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 TXNDC11Q6PKC3 985 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 SASS6Q6UVJ0 657 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 GBP6Q6ZN66 633 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 CCDC186Q7Z3E2 898 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 PIGZQ86VD9 579 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 ZNF687Q8N1G0 1237 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 OSCP1Q8WVF1 389 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 MSANTD3Q96H12 275 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 ZSWIM1Q9BR11 485 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 TUBGCP2Q9BSJ2 902 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 C8orf33Q9H7E9 229 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-219ENST00000555563 SAMSN1Q9NSI8 373 aaKnown RBP14.47□□□□□ -0.09
SHMT2-219ENST00000555563 DUS2Q9NX74 493 aaKnown RBP14.47□□□□□ -0.09
SHMT2-219ENST00000555563 TMEM63CQ9P1W3 806 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 HESX1Q9UBX0 185 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 NFE2L3Q9Y4A8 694 aa14.47□□□□□ -0.09
SHMT2-219ENST00000555563 A0A1W2PQH9 124 aa14.46□□□□□ -0.09
SHMT2-219ENST00000555563 TULP2O00295 520 aa14.46□□□□□ -0.09
SHMT2-219ENST00000555563 SCAMP3O14828 347 aaKnown RBP14.46□□□□□ -0.09
SHMT2-219ENST00000555563 TLR5O60602 858 aa14.46□□□□□ -0.09
SHMT2-219ENST00000555563 PRKCSHP14314 528 aaPredicted RBP14.46□□□□□ -0.09
SHMT2-219ENST00000555563 IFNAR2P48551 515 aa14.46□□□□□ -0.09
SHMT2-219ENST00000555563 SLC8A3P57103 927 aa14.46□□□□□ -0.09
SHMT2-219ENST00000555563 PDE4CQ08493 712 aa14.46□□□□□ -0.09
SHMT2-219ENST00000555563 BST2Q10589 180 aaKnown RBP14.46□□□□□ -0.09
SHMT2-219ENST00000555563 RUNX3Q13761 415 aa14.46□□□□□ -0.09
SHMT2-219ENST00000555563 STX1AQ16623 288 aa14.46□□□□□ -0.09
SHMT2-219ENST00000555563 EXOC3L4Q17RC7 722 aa14.46□□□□□ -0.09
SHMT2-219ENST00000555563 GJB7Q6PEY0 223 aa14.46□□□□□ -0.09
SHMT2-219ENST00000555563 RALGPS2Q86X27 583 aaPredicted RBP14.46□□□□□ -0.09
SHMT2-219ENST00000555563 ENOX1Q8TC92 643 aaKnown RBP14.46□□□□□ -0.09
SHMT2-219ENST00000555563 CHFRQ96EP1 664 aa14.46□□□□□ -0.09
SHMT2-219ENST00000555563 ZFRQ96KR1 1074 aaKnown RBP14.46□□□□□ -0.09
SHMT2-219ENST00000555563 NELL2Q99435 816 aa14.46□□□□□ -0.09
SHMT2-219ENST00000555563 NACA2Q9H009 215 aa14.46□□□□□ -0.09
SHMT2-219ENST00000555563 IRF2BPLQ9H1B7 796 aa14.46□□□□□ -0.09
SHMT2-219ENST00000555563 NMUR1Q9HB89 426 aa14.46□□□□□ -0.09
SHMT2-219ENST00000555563 UBE2TQ9NPD8 197 aaPredicted RBP14.46□□□□□ -0.09
SHMT2-219ENST00000555563 CYLDQ9NQC7 956 aa14.46□□□□□ -0.09
SHMT2-219ENST00000555563 TLR8Q9NR97 1041 aaKnown RBP14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms