RNA–Protein interactions for RNA: ENST00000554928.1

SYNE2-214, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 1,048 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-214ENST00000554928 NAA15Q9BXJ9 866 aaKnown RBP13.04□□□□□ -0.32
SYNE2-214ENST00000554928 GANQ9H2C0 597 aa13.04□□□□□ -0.32
SYNE2-214ENST00000554928 CBX8Q9HC52 389 aa13.04□□□□□ -0.32
SYNE2-214ENST00000554928 SMPD4Q9NXE4 827 aa13.04□□□□□ -0.32
SYNE2-214ENST00000554928 NUDT5Q9UKK9 219 aa13.04□□□□□ -0.32
SYNE2-214ENST00000554928 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.04□□□□□ -0.32
SYNE2-214ENST00000554928 SIK3Q9Y2K2 1263 aa13.04□□□□□ -0.32
SYNE2-214ENST00000554928 USP3Q9Y6I4 520 aa13.04□□□□□ -0.32
SYNE2-214ENST00000554928 TRAV19A0A0A6YYK7 116 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 A0A1W2PQH9 124 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 FAM170AA1A519 330 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 LGALS16A8MUM7 142 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 M0QYV0 167 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 MDM4O15151 490 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 TEX33O43247 280 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 COCHO43405 550 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 OLFM2O95897 454 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 TBX18O95935 607 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 CKMP06732 381 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 HDCP19113 662 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 DDX6P26196 483 aaKnown RBP eCLIP13.03□□□□□ -0.32
SYNE2-214ENST00000554928 WEE1P30291 646 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 CLCN1P35523 988 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 AVPR1AP37288 418 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 USP8P40818 1118 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 SOX9P48436 509 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 MFAP3P55082 362 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 TNK2Q07912 1038 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 FCHO2Q0JRZ9 810 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 ZNF77Q15935 545 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 CNGA2Q16280 664 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 RAB41Q5JT25 222 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 TRIM68Q6AZZ1 485 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 LUZP1Q86V48 1076 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 PBXIP1Q96AQ6 731 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 ZFRQ96KR1 1074 aaKnown RBP13.03□□□□□ -0.32
SYNE2-214ENST00000554928 SLITRK1Q96PX8 696 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 TRMT61BQ9BVS5 477 aaKnown RBP13.03□□□□□ -0.32
SYNE2-214ENST00000554928 BRD9Q9H8M2 597 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 HEBP1Q9NRV9 189 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 TDP1Q9NUW8 608 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 CYTH4Q9UIA0 394 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 FBXL21Q9UKT6 434 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 SCML2Q9UQR0 700 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 PATJQ8NI35 1801 aa13.03□□□□□ -0.32
SYNE2-214ENST00000554928 DENND4CQ5VZ89 1909 aa13.02□□□□□ -0.32
SYNE2-214ENST00000554928 ANAPC1Q9H1A4 1944 aa13.02□□□□□ -0.32
SYNE2-214ENST00000554928 OTOL1A6NHN0 477 aaPredicted RBP13.02□□□□□ -0.33
SYNE2-214ENST00000554928 LRRC10BA6NIK2 292 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 PRR33A8MZF0 331 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 DPYSL4O14531 572 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 XPO1O14980 1071 aaKnown RBP13.02□□□□□ -0.33
SYNE2-214ENST00000554928 PI15O43692 258 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 LETM1O95202 739 aaPredicted RBP13.02□□□□□ -0.33
SYNE2-214ENST00000554928 USP17L7P0C7H9 530 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 ARSAP15289 507 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 UCHL3P15374 230 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 TRIM21P19474 475 aaKnown RBP13.02□□□□□ -0.33
SYNE2-214ENST00000554928 PTMSP20962 102 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 CDK11BP21127 795 aaKnown RBP13.02□□□□□ -0.33
SYNE2-214ENST00000554928 CD72P21854 359 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 TIE1P35590 1138 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 BCAT1P54687 386 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 BST2Q10589 180 aaKnown RBP13.02□□□□□ -0.33
SYNE2-214ENST00000554928 USP4Q13107 963 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 RAPGEF1Q13905 1077 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 DRAP1Q14919 205 aaPredicted RBP13.02□□□□□ -0.33
SYNE2-214ENST00000554928 SYCP1Q15431 976 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 SLC44A4Q53GD3 710 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 SNX30Q5VWJ9 437 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 PMF1Q6P1K2 205 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 ENOSF1Q7L5Y1 443 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 CELF5Q8N6W0 485 aaKnown RBP13.02□□□□□ -0.33
SYNE2-214ENST00000554928 BPIFB1Q8TDL5 484 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 SH3RF2Q8TEC5 729 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 DEPDC1BQ8WUY9 529 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 SLC35F5Q8WV83 523 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 ULBP1Q9BZM6 244 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 FOXQ1Q9C009 403 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 PNPLA8Q9NP80 782 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 HPS4Q9NQG7 708 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 ARHGEF3Q9NR81 526 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 FAM207AQ9NSI2 230 aaPredicted RBP13.02□□□□□ -0.33
SYNE2-214ENST00000554928 COMMD8Q9NX08 183 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 WNT16Q9UBV4 365 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 HESX1Q9UBX0 185 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 TJP2Q9UDY2 1190 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 KIAA1257Q9ULG3 409 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 CPQQ9Y646 472 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 COL4A2P08572 1712 aa13.02□□□□□ -0.33
SYNE2-214ENST00000554928 NUP210Q8TEM1 1887 aaPredicted RBP13.02□□□□□ -0.33
SYNE2-214ENST00000554928 ZNF638Q14966 1978 aaKnown RBP13.01□□□□□ -0.33
SYNE2-214ENST00000554928 LEFTY2O00292 366 aa13.01□□□□□ -0.33
SYNE2-214ENST00000554928 ZNF263O14978 683 aa13.01□□□□□ -0.33
SYNE2-214ENST00000554928 THAP12O43422 761 aa13.01□□□□□ -0.33
SYNE2-214ENST00000554928 MBL2P11226 248 aaPredicted RBP13.01□□□□□ -0.33
SYNE2-214ENST00000554928 GNA15P30679 374 aa13.01□□□□□ -0.33
SYNE2-214ENST00000554928 GPD2P43304 727 aa13.01□□□□□ -0.33
SYNE2-214ENST00000554928 PLA2G4AP47712 749 aa13.01□□□□□ -0.33
SYNE2-214ENST00000554928 TKTL1P51854 596 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms