RNA–Protein interactions for RNA: ENST00000553989.1

TDP1-208, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 728 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-208ENST00000553989 SPACA7Q96KW9 195 aa9.41□□□□□ -0.9
TDP1-208ENST00000553989 PCMTD1Q96MG8 357 aaPredicted RBP9.41□□□□□ -0.9
TDP1-208ENST00000553989 SLITRK1Q96PX8 696 aa9.41□□□□□ -0.9
TDP1-208ENST00000553989 FNBP1Q96RU3 617 aa9.41□□□□□ -0.9
TDP1-208ENST00000553989 CRTAC1Q9NQ79 661 aa9.41□□□□□ -0.9
TDP1-208ENST00000553989 GCNT4Q9P109 453 aa9.41□□□□□ -0.9
TDP1-208ENST00000553989 PCDHGA10Q9Y5H3 936 aa9.41□□□□□ -0.9
TDP1-208ENST00000553989 CPQQ9Y646 472 aa9.41□□□□□ -0.9
TDP1-208ENST00000553989 PTPRJQ12913 1337 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 LNP1A1A4G5 178 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 FRMD3A2A2Y4 597 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 F8VP50 259 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 SLC9A3R1O14745 358 aaPredicted RBP9.4□□□□□ -0.9
TDP1-208ENST00000553989 APODP05090 189 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 TCF3P15923 654 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 PFKLP17858 780 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 BCKDHBP21953 392 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 WARSP23381 471 aaKnown RBP9.4□□□□□ -0.9
TDP1-208ENST00000553989 GNL1P36915 607 aaPredicted RBP9.4□□□□□ -0.9
TDP1-208ENST00000553989 OPRD1P41143 372 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 PPP3CCP48454 512 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 USP46P62068 366 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 ASIC1P78348 528 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 KDSRQ06136 332 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 TYRO3Q06418 890 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 ZNF252P-AS1Q0IIN9 211 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 FOXC1Q12948 553 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 RESTQ13127 1097 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 TRPC3Q13507 836 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 STK38Q15208 465 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 UAP1L1Q3KQV9 507 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 DNTTIP2Q5QJE6 756 aaKnown RBP9.4□□□□□ -0.9
TDP1-208ENST00000553989 TDRD10Q5VZ19 366 aaKnown RBP9.4□□□□□ -0.9
TDP1-208ENST00000553989 PMS2CLQ68D20 193 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 ARMCX6Q7L4S7 300 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 WDR49Q8IV35 697 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 PGBD3Q8N328 593 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 MDGA1Q8NFP4 955 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 CXorf38Q8TB03 319 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 UBE2Q2Q8WVN8 375 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 PIGKQ92643 395 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 CCDC127Q96BQ5 260 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 SPATA17Q96L03 361 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 CNOT6LQ96LI5 555 aaKnown RBP9.4□□□□□ -0.9
TDP1-208ENST00000553989 REPIN1Q9BWE0 567 aaKnown RBP9.4□□□□□ -0.9
TDP1-208ENST00000553989 LRRC27Q9C0I9 530 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 POLMQ9NP87 494 aaPredicted RBP9.4□□□□□ -0.9
TDP1-208ENST00000553989 TMEM9BQ9NQ34 198 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 HSPBP1Q9NZL4 362 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 CFAP97Q9P2B7 532 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 TFIP11Q9UBB9 837 aaKnown RBP9.4□□□□□ -0.9
TDP1-208ENST00000553989 MMP17Q9ULZ9 603 aa9.4□□□□□ -0.9
TDP1-208ENST00000553989 MAP1BP46821 2468 aaKnown RBP9.4□□□□□ -0.91
TDP1-208ENST00000553989 ZNF840PA6NDX5 716 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 A8MXQ7 604 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 K7EQS6 105 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 TM4SF5O14894 197 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 PHACTR2O75167 634 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 KLF8O95600 359 aaPredicted RBP9.39□□□□□ -0.91
TDP1-208ENST00000553989 ADH1CP00326 375 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 CYP17A1P05093 508 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 CYP2J2P51589 502 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 SLC7A9P82251 487 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 MRPS21P82921 87 aaKnown RBP9.39□□□□□ -0.91
TDP1-208ENST00000553989 SHC2P98077 582 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 TAF10Q12962 218 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 DHCR24Q15392 516 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 CRY1Q16526 586 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 SNRNP35Q16560 246 aaKnown RBP9.39□□□□□ -0.91
TDP1-208ENST00000553989 WDR72Q3MJ13 1102 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 SH3PXD2AQ5TCZ1 1133 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 LPCAT2Q7L5N7 544 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 TRAPPC11Q7Z392 1133 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 DDX42Q86XP3 938 aaKnown RBP eCLIP9.39□□□□□ -0.91
TDP1-208ENST00000553989 ALLCQ8N6M5 410 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 TXNDC5Q8NBS9 432 aaKnown RBP9.39□□□□□ -0.91
TDP1-208ENST00000553989 GLIS3Q8NEA6 775 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 MYCBPAPQ8TBZ2 947 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 WHAMMQ8TF30 809 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 HMGB4Q8WW32 186 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 RLN3Q8WXF3 142 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 HPS3Q969F9 1004 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 FBXO32Q969P5 355 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 CEP295NLQ96MC4 621 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 USP28Q96RU2 1077 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 PNKPQ96T60 521 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 MRPL45Q9BRJ2 306 aaKnown RBP9.39□□□□□ -0.91
TDP1-208ENST00000553989 MED10Q9BTT4 135 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 TMUB1Q9BVT8 246 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 ELOVL4Q9GZR5 314 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 NACA2Q9H009 215 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 NAT10Q9H0A0 1025 aaKnown RBP9.39□□□□□ -0.91
TDP1-208ENST00000553989 KIAA1586Q9HCI6 787 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 ARHGEF4Q9NR80 690 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 NXF1Q9UBU9 619 aaKnown RBP9.39□□□□□ -0.91
TDP1-208ENST00000553989 SH3BP1Q9Y3L3 701 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 CNOT1A5YKK6 2376 aaKnown RBP9.39□□□□□ -0.91
TDP1-208ENST00000553989 EML5Q05BV3 1969 aa9.39□□□□□ -0.91
TDP1-208ENST00000553989 ATP8B3O60423 1300 aa9.38□□□□□ -0.91
TDP1-208ENST00000553989 ATXN2Q99700 1313 aaKnown RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms