RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 ZIK1Q3SY52 487 aaPredicted RBP6.45□□□□□ -1.38
SCFD1-208ENST00000553278 GALNTL6Q49A17 601 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 ZMYM1Q5SVZ6 1142 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 DGAT2L7PQ6IED9 249 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 ANO7Q6IWH7 933 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 TAPT1Q6NXT6 567 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 LRRC8DQ7L1W4 858 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 RNF169Q8NCN4 708 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 PSD4Q8NDX1 1056 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 MBD3L2Q8NHZ7 208 aaPredicted RBP6.45□□□□□ -1.38
SCFD1-208ENST00000553278 TTC14Q96N46 770 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 TLR10Q9BXR5 811 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 MCOLN1Q9GZU1 580 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 PRDM13Q9H4Q3 707 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 SPON1Q9HCB6 807 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 FSCN3Q9NQT6 498 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 POGKQ9P215 609 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 CCDC78A2IDD5 438 aa6.44□□□□□ -1.38
SCFD1-208ENST00000553278 SEPT4O43236 478 aa6.44□□□□□ -1.38
SCFD1-208ENST00000553278 KLK10O43240 276 aa6.44□□□□□ -1.38
SCFD1-208ENST00000553278 TRIM13O60858 407 aa6.44□□□□□ -1.38
SCFD1-208ENST00000553278 TAF5LO75529 589 aa6.44□□□□□ -1.38
SCFD1-208ENST00000553278 RPP40O75818 363 aaKnown RBP6.44□□□□□ -1.38
SCFD1-208ENST00000553278 SCGB1D1O95968 90 aa6.44□□□□□ -1.38
SCFD1-208ENST00000553278 HSPA1AP0DMV8 641 aaKnown RBP6.44□□□□□ -1.38
SCFD1-208ENST00000553278 HSPA1BP0DMV9 641 aaKnown RBP6.44□□□□□ -1.38
SCFD1-208ENST00000553278 HK1P19367 917 aa6.44□□□□□ -1.38
SCFD1-208ENST00000553278 MGAT1P26572 445 aa6.44□□□□□ -1.38
SCFD1-208ENST00000553278 PRKAR1BP31321 381 aa6.44□□□□□ -1.38
SCFD1-208ENST00000553278 PAFAH1B1P43034 410 aa6.44□□□□□ -1.38
SCFD1-208ENST00000553278 TOB1P50616 345 aaPredicted RBP6.44□□□□□ -1.38
SCFD1-208ENST00000553278 SF3A3Q12874 501 aaKnown RBP eCLIP6.44□□□□□ -1.38
SCFD1-208ENST00000553278 MYO1EQ12965 1108 aa6.44□□□□□ -1.38
SCFD1-208ENST00000553278 CUL4AQ13619 759 aa6.44□□□□□ -1.38
SCFD1-208ENST00000553278 CCDC184Q52MB2 194 aa6.44□□□□□ -1.38
SCFD1-208ENST00000553278 NOMO2Q5JPE7 1267 aa6.44□□□□□ -1.38
SCFD1-208ENST00000553278 ARMC3Q5W041 872 aa6.44□□□□□ -1.38
SCFD1-208ENST00000553278 SLC30A10Q6XR72 485 aa6.44□□□□□ -1.38
SCFD1-208ENST00000553278 MED25Q71SY5 747 aa6.44□□□□□ -1.38
SCFD1-208ENST00000553278 TRABD2AQ86V40 505 aa6.44□□□□□ -1.38
SCFD1-208ENST00000553278 ABI1Q8IZP0 508 aa6.44□□□□□ -1.38
SCFD1-208ENST00000553278 SHCBP1Q8NEM2 672 aa6.44□□□□□ -1.38
SCFD1-208ENST00000553278 DNAJB14Q8TBM8 379 aa6.44□□□□□ -1.38
SCFD1-208ENST00000553278 STAMQ92783 540 aa6.44□□□□□ -1.38
SCFD1-208ENST00000553278 HIST1H2AAQ96QV6 131 aa6.44□□□□□ -1.38
SCFD1-208ENST00000553278 REXO4Q9GZR2 422 aaKnown RBP6.44□□□□□ -1.38
SCFD1-208ENST00000553278 RSPH9Q9H1X1 276 aaPredicted RBP6.44□□□□□ -1.38
SCFD1-208ENST00000553278 LIN7CQ9NUP9 197 aaKnown RBP6.44□□□□□ -1.38
SCFD1-208ENST00000553278 BAG5Q9UL15 447 aa6.44□□□□□ -1.38
SCFD1-208ENST00000553278 HSF4Q9ULV5 492 aa6.44□□□□□ -1.38
SCFD1-208ENST00000553278 SYNDIG1LA6NDD5 238 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 C9orf118A6NHY6 69 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 KIF28PB7ZC32 967 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 KIAA0355O15063 1070 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 DHHO43323 396 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 GUCY1B2O75343 617 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 RPN1P04843 607 aaKnown RBP6.43□□□□□ -1.38
SCFD1-208ENST00000553278 ACADMP11310 421 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 VDRP11473 427 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 FCER1AP12319 257 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 TGM1P22735 817 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 MAGEA10P43363 369 aaPredicted RBP6.43□□□□□ -1.38
SCFD1-208ENST00000553278 CCT4P50991 539 aaKnown RBP6.43□□□□□ -1.38
SCFD1-208ENST00000553278 PGDP52209 483 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 ZNF134P52741 427 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 ADAM17P78536 824 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 SLFN5Q08AF3 891 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 PDCLQ13371 301 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 EIF4A2Q14240 407 aaKnown RBP6.43□□□□□ -1.38
SCFD1-208ENST00000553278 RNF151Q2KHN1 245 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 PTCHD3Q3KNS1 767 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 TBRG1Q3YBR2 411 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 ZNF569Q5MCW4 686 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 MCTP2Q6DN12 878 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 MFSD5Q6N075 450 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 TAF2Q6P1X5 1199 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 RASGRP2Q7LDG7 609 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 GPRIN1Q7Z2K8 1008 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 CPLX4Q7Z7G2 160 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 ANKRD44Q8N8A2 993 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 ZNF512Q96ME7 567 aaPredicted RBP6.43□□□□□ -1.38
SCFD1-208ENST00000553278 DIRC2Q96SL1 478 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 PTDSS2Q9BVG9 487 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 SGPP1Q9BX95 441 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 NSUN3Q9H649 340 aaKnown RBP6.43□□□□□ -1.38
SCFD1-208ENST00000553278 TBC1D29Q9UFV1 150 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 VPS51Q9UID3 782 aa6.43□□□□□ -1.38
SCFD1-208ENST00000553278 CNOT7Q9UIV1 285 aaKnown RBP6.43□□□□□ -1.38
SCFD1-208ENST00000553278 RSF1Q96T23 1441 aaPredicted RBP6.42□□□□□ -1.38
SCFD1-208ENST00000553278 CCDC195A0A1B0GUA6 201 aa6.42□□□□□ -1.38
SCFD1-208ENST00000553278 FAM90A20PA6NIJ5 464 aa6.42□□□□□ -1.38
SCFD1-208ENST00000553278 URI1O94763 535 aaPredicted RBP6.42□□□□□ -1.38
SCFD1-208ENST00000553278 STARD3NLO95772 234 aa6.42□□□□□ -1.38
SCFD1-208ENST00000553278 CER1O95813 267 aa6.42□□□□□ -1.38
SCFD1-208ENST00000553278 AKR1B1P15121 316 aa6.42□□□□□ -1.38
SCFD1-208ENST00000553278 ITGALP20701 1170 aa6.42□□□□□ -1.38
SCFD1-208ENST00000553278 RBL1P28749 1068 aa6.42□□□□□ -1.38
SCFD1-208ENST00000553278 GALNSP34059 522 aa6.42□□□□□ -1.38
SCFD1-208ENST00000553278 HOXD13P35453 343 aa6.42□□□□□ -1.38
SCFD1-208ENST00000553278 RPP30P78346 268 aaKnown RBP6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms