RNA–Protein interactions for RNA: ENST00000550075.5

CPSF6-205, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 540 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-205ENST00000550075 KIF11P52732 1056 aa27.36■■□□□ 1.97
CPSF6-205ENST00000550075 SLC7A9P82251 487 aa27.36■■□□□ 1.97
CPSF6-205ENST00000550075 ARHGAP44Q17R89 818 aa27.36■■□□□ 1.97
CPSF6-205ENST00000550075 ASTLQ6HA08 431 aaPredicted RBP27.36■■□□□ 1.97
CPSF6-205ENST00000550075 PIGZQ86VD9 579 aa27.36■■□□□ 1.97
CPSF6-205ENST00000550075 SLC22A12Q96S37 553 aa27.36■■□□□ 1.97
CPSF6-205ENST00000550075 CYP2S1Q96SQ9 504 aa27.36■■□□□ 1.97
CPSF6-205ENST00000550075 NACA2Q9H009 215 aa27.36■■□□□ 1.97
CPSF6-205ENST00000550075 CHORDC1Q9UHD1 332 aaPredicted RBP27.36■■□□□ 1.97
CPSF6-205ENST00000550075 WDR3Q9UNX4 943 aaKnown RBP eCLIP27.36■■□□□ 1.97
CPSF6-205ENST00000550075 HCN4Q9Y3Q4 1203 aa27.36■■□□□ 1.97
CPSF6-205ENST00000550075 OLFM2O95897 454 aa27.35■■□□□ 1.97
CPSF6-205ENST00000550075 ZDHHC11BP0C7U3 371 aa27.35■■□□□ 1.97
CPSF6-205ENST00000550075 TCF3P15923 654 aa27.35■■□□□ 1.97
CPSF6-205ENST00000550075 CDK11BP21127 795 aaKnown RBP27.35■■□□□ 1.97
CPSF6-205ENST00000550075 BRD2P25440 801 aaKnown RBP27.35■■□□□ 1.97
CPSF6-205ENST00000550075 PSEN1P49768 467 aa27.35■■□□□ 1.97
CPSF6-205ENST00000550075 CLCN5P51795 746 aa27.35■■□□□ 1.97
CPSF6-205ENST00000550075 PDE4CQ08493 712 aa27.35■■□□□ 1.97
CPSF6-205ENST00000550075 CNGA2Q16280 664 aa27.35■■□□□ 1.97
CPSF6-205ENST00000550075 GJB7Q6PEY0 223 aa27.35■■□□□ 1.97
CPSF6-205ENST00000550075 CCDC186Q7Z3E2 898 aa27.35■■□□□ 1.97
CPSF6-205ENST00000550075 DDX42Q86XP3 938 aaKnown RBP eCLIP27.35■■□□□ 1.97
CPSF6-205ENST00000550075 MSANTD3Q96H12 275 aa27.35■■□□□ 1.97
CPSF6-205ENST00000550075 VPS16Q9H269 839 aa27.35■■□□□ 1.97
CPSF6-205ENST00000550075 COL4A2P08572 1712 aa27.35■■□□□ 1.97
CPSF6-205ENST00000550075 SMTNL1A8MU46 457 aa27.34■■□□□ 1.97
CPSF6-205ENST00000550075 M0QYV0 167 aa27.34■■□□□ 1.97
CPSF6-205ENST00000550075 RNF225M0QZC1 329 aaPredicted RBP27.34■■□□□ 1.97
CPSF6-205ENST00000550075 CYP26A1O43174 497 aa27.34■■□□□ 1.97
CPSF6-205ENST00000550075 MED7O43513 233 aa27.34■■□□□ 1.97
CPSF6-205ENST00000550075 MBL2P11226 248 aaPredicted RBP27.34■■□□□ 1.97
CPSF6-205ENST00000550075 USP8P40818 1118 aa27.34■■□□□ 1.97
CPSF6-205ENST00000550075 STARD6P59095 220 aa27.34■■□□□ 1.97
CPSF6-205ENST00000550075 MTF1Q14872 753 aa27.34■■□□□ 1.97
CPSF6-205ENST00000550075 ZNF77Q15935 545 aa27.34■■□□□ 1.97
CPSF6-205ENST00000550075 TPRG1Q6ZUI0 275 aa27.34■■□□□ 1.97
CPSF6-205ENST00000550075 TTC16Q8NEE8 873 aa27.34■■□□□ 1.97
CPSF6-205ENST00000550075 SH3RF2Q8TEC5 729 aa27.34■■□□□ 1.97
CPSF6-205ENST00000550075 TFAP2BQ92481 460 aa27.34■■□□□ 1.97
CPSF6-205ENST00000550075 SHC3Q92529 594 aa27.34■■□□□ 1.97
CPSF6-205ENST00000550075 LRRC3BQ96PB8 259 aa27.34■■□□□ 1.97
CPSF6-205ENST00000550075 LRRC4Q9HBW1 653 aa27.34■■□□□ 1.97
CPSF6-205ENST00000550075 SIX2Q9NPC8 291 aa27.34■■□□□ 1.97
CPSF6-205ENST00000550075 HEBP1Q9NRV9 189 aa27.34■■□□□ 1.97
CPSF6-205ENST00000550075 ZNF318Q5VUA4 2279 aa27.33■■□□□ 1.97
CPSF6-205ENST00000550075 ARNTLO00327 626 aa27.33■■□□□ 1.97
CPSF6-205ENST00000550075 GLULP15104 373 aa27.33■■□□□ 1.97
CPSF6-205ENST00000550075 PLA2G4AP47712 749 aa27.33■■□□□ 1.97
CPSF6-205ENST00000550075 PDGFRLQ15198 375 aa27.33■■□□□ 1.97
CPSF6-205ENST00000550075 CWF19L1Q69YN2 538 aaKnown RBP27.33■■□□□ 1.97
CPSF6-205ENST00000550075 C1orf228Q6PIY5 440 aa27.33■■□□□ 1.97
CPSF6-205ENST00000550075 ARHGAP18Q8N392 663 aa27.33■■□□□ 1.97
CPSF6-205ENST00000550075 LSM14BQ9BX40 385 aaKnown RBP27.33■■□□□ 1.97
CPSF6-205ENST00000550075 LIMA1Q9UHB6 759 aaKnown RBP27.33■■□□□ 1.97
CPSF6-205ENST00000550075 DNAJC12Q9UKB3 198 aa27.33■■□□□ 1.97
CPSF6-205ENST00000550075 MRPS17Q9Y2R5 130 aaKnown RBP27.33■■□□□ 1.97
CPSF6-205ENST00000550075 CPQQ9Y646 472 aa27.33■■□□□ 1.97
CPSF6-205ENST00000550075 USP3Q9Y6I4 520 aa27.33■■□□□ 1.97
CPSF6-205ENST00000550075 KMT2EQ8IZD2 1858 aa27.33■■□□□ 1.97
CPSF6-205ENST00000550075 SYCE3A1L190 88 aa27.32■■□□□ 1.96
CPSF6-205ENST00000550075 MAN2B1O00754 1011 aa27.32■■□□□ 1.96
CPSF6-205ENST00000550075 TLR5O60602 858 aa27.32■■□□□ 1.96
CPSF6-205ENST00000550075 AOC1P19801 751 aa27.32■■□□□ 1.96
CPSF6-205ENST00000550075 GNA15P30679 374 aa27.32■■□□□ 1.96
CPSF6-205ENST00000550075 IFNAR2P48551 515 aa27.32■■□□□ 1.96
CPSF6-205ENST00000550075 ZNF165P49910 485 aa27.32■■□□□ 1.96
CPSF6-205ENST00000550075 COPB1P53618 953 aaKnown RBP27.32■■□□□ 1.96
CPSF6-205ENST00000550075 MLLT6P55198 1093 aaPredicted RBP27.32■■□□□ 1.96
CPSF6-205ENST00000550075 APBA1Q02410 837 aa27.32■■□□□ 1.96
CPSF6-205ENST00000550075 NCAPHQ15003 741 aa27.32■■□□□ 1.96
CPSF6-205ENST00000550075 MEA1Q16626 185 aa27.32■■□□□ 1.96
CPSF6-205ENST00000550075 RAB41Q5JT25 222 aa27.32■■□□□ 1.96
CPSF6-205ENST00000550075 TADA2BQ86TJ2 420 aa27.32■■□□□ 1.96
CPSF6-205ENST00000550075 KIAA1958Q8N8K9 716 aa27.32■■□□□ 1.96
CPSF6-205ENST00000550075 UBA3Q8TBC4 463 aa27.32■■□□□ 1.96
CPSF6-205ENST00000550075 CDK5RAP1Q96SZ6 601 aaKnown RBP27.32■■□□□ 1.96
CPSF6-205ENST00000550075 C8orf33Q9H7E9 229 aaPredicted RBP27.32■■□□□ 1.96
CPSF6-205ENST00000550075 PIAS3Q9Y6X2 628 aa27.32■■□□□ 1.96
CPSF6-205ENST00000550075 KANSL1LA0AUZ9 987 aa27.31■■□□□ 1.96
CPSF6-205ENST00000550075 COCHO43405 550 aa27.31■■□□□ 1.96
CPSF6-205ENST00000550075 THAP12O43422 761 aa27.31■■□□□ 1.96
CPSF6-205ENST00000550075 ZNF18P17022 549 aa27.31■■□□□ 1.96
CPSF6-205ENST00000550075 AVPR2P30518 371 aa27.31■■□□□ 1.96
CPSF6-205ENST00000550075 TKTL1P51854 596 aa27.31■■□□□ 1.96
CPSF6-205ENST00000550075 KPNA1P52294 538 aaPredicted RBP27.31■■□□□ 1.96
CPSF6-205ENST00000550075 ZNF852Q6ZMS4 543 aa27.31■■□□□ 1.96
CPSF6-205ENST00000550075 SIX6OS1Q8N1H7 587 aa27.31■■□□□ 1.96
CPSF6-205ENST00000550075 ZFYVE19Q96K21 471 aa27.31■■□□□ 1.96
CPSF6-205ENST00000550075 DDX23Q9BUQ8 820 aaKnown RBP27.31■■□□□ 1.96
CPSF6-205ENST00000550075 RNF38Q9H0F5 515 aa27.31■■□□□ 1.96
CPSF6-205ENST00000550075 CCSER2Q9H7U1 834 aa27.31■■□□□ 1.96
CPSF6-205ENST00000550075 GKN1Q9NS71 199 aa27.31■■□□□ 1.96
CPSF6-205ENST00000550075 NAGPAQ9UK23 515 aa27.31■■□□□ 1.96
CPSF6-205ENST00000550075 BECN2A8MW95 431 aa27.3■■□□□ 1.96
CPSF6-205ENST00000550075 LEFTY2O00292 366 aa27.3■■□□□ 1.96
CPSF6-205ENST00000550075 RALAP11233 206 aa27.3■■□□□ 1.96
CPSF6-205ENST00000550075 RAPGEF1Q13905 1077 aa27.3■■□□□ 1.96
CPSF6-205ENST00000550075 ITPRIPL2Q3MIP1 535 aa27.3■■□□□ 1.96
CPSF6-205ENST00000550075 PKDCCQ504Y2 493 aa27.3■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms