RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 PLEKHG4Q58EX7 1191 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 LMBRD2Q68DH5 695 aaPredicted RBP8.97□□□□□ -0.97
VPS29-203ENST00000546588 SCARA3Q6AZY7 606 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 PPP1R2P3Q6NXS1 205 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 AGMOQ6ZNB7 445 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 LRRC8DQ7L1W4 858 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 GET4Q7L5D6 327 aaPredicted RBP8.97□□□□□ -0.97
VPS29-203ENST00000546588 VPS36Q86VN1 386 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 HACE1Q8IYU2 909 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 RNF10Q8N5U6 811 aaKnown RBP8.97□□□□□ -0.97
VPS29-203ENST00000546588 ZNF513Q8N8E2 541 aaPredicted RBP8.97□□□□□ -0.97
VPS29-203ENST00000546588 ACRBPQ8NEB7 543 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 ELOA3Q8NG57 546 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 LNX1Q8TBB1 728 aaPredicted RBP8.97□□□□□ -0.97
VPS29-203ENST00000546588 SNRNP27Q8WVK2 155 aaKnown RBP8.97□□□□□ -0.97
VPS29-203ENST00000546588 LINC01599Q8WXQ3 324 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 IFIH1Q9BYX4 1025 aaKnown RBP8.97□□□□□ -0.97
VPS29-203ENST00000546588 TRIM6Q9C030 488 aaPredicted RBP8.97□□□□□ -0.97
VPS29-203ENST00000546588 TRPV6Q9H1D0 765 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 TMEM39AQ9NV64 488 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 SLC38A7Q9NVC3 462 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 DPP3Q9NY33 737 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 PPT2Q9UMR5 302 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 PCDHB5Q9Y5E4 795 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 PLXNA3P51805 1871 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 UMODL1Q5DID0 1318 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 GREB1Q4ZG55 1949 aa8.97□□□□□ -0.97
VPS29-203ENST00000546588 FANCGO15287 622 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 KRT86O43790 486 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 AKR1B10O60218 316 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 NBNO60934 754 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 CILPO75339 1184 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 TACC1O75410 805 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 OFD1O75665 1012 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 MTA2O94776 668 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 IPO7O95373 1038 aaKnown RBP8.96□□□□□ -0.98
VPS29-203ENST00000546588 ITGB3P05106 788 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 PAEPP09466 180 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 GHRP10912 638 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 UNGP13051 313 aaPredicted RBP8.96□□□□□ -0.98
VPS29-203ENST00000546588 CHRNB2P17787 502 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 CD52P31358 61 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 RFC2P35250 354 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 PDE6CP51160 858 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 RBP5P82980 135 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 TFAMQ00059 246 aaKnown RBP8.96□□□□□ -0.98
VPS29-203ENST00000546588 FMO1Q01740 532 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 GFPT1Q06210 699 aaPredicted RBP8.96□□□□□ -0.98
VPS29-203ENST00000546588 TDRD12Q587J7 1177 aaKnown RBP8.96□□□□□ -0.98
VPS29-203ENST00000546588 ZNF667Q5HYK9 610 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 TWF2Q6IBS0 349 aaKnown RBP8.96□□□□□ -0.98
VPS29-203ENST00000546588 BNC2Q6ZN30 1099 aaPredicted RBP8.96□□□□□ -0.98
VPS29-203ENST00000546588 JAZF1Q86VZ6 243 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 KRTAP1-3Q8IUG1 177 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 C17orf53Q8N3J3 647 aaPredicted RBP8.96□□□□□ -0.98
VPS29-203ENST00000546588 BEST2Q8NFU1 509 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 FBXO27Q8NI29 283 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 PGBD4Q96DM1 585 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 FAM84AQ96KN4 292 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 ZNF560Q96MR9 790 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 DESI2Q9BSY9 194 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 PI4K2AQ9BTU6 479 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 MIR1-1HGQ9H1L0 117 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 CXCL16Q9H2A7 254 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 LUC7LQ9NQ29 371 aaKnown RBP8.96□□□□□ -0.98
VPS29-203ENST00000546588 DNAJB12Q9NXW2 375 aaKnown RBP8.96□□□□□ -0.98
VPS29-203ENST00000546588 GINS2Q9Y248 185 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 PCDHGC5Q9Y5F6 944 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 PCDHA13Q9Y5I0 950 aa8.96□□□□□ -0.98
VPS29-203ENST00000546588 MRPL42Q9Y6G3 142 aaKnown RBP8.96□□□□□ -0.98
VPS29-203ENST00000546588 ADARB2-AS1A8MUL3 147 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 TMEM189-UBE2V1I3L0A0 370 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 SMNDC1O75940 238 aaKnown RBP eCLIP8.95□□□□□ -0.986e-11■■■■□ 20.7
VPS29-203ENST00000546588 LSM8O95777 96 aaKnown RBP8.95□□□□□ -0.98
VPS29-203ENST00000546588 TMEM253P0C7T8 217 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 PNMA6AP0CW24 399 aaPredicted RBP8.95□□□□□ -0.98
VPS29-203ENST00000546588 P4HA1P13674 534 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 CPB1P15086 417 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 ZSCAN20P17040 1043 aaPredicted RBP8.95□□□□□ -0.98
VPS29-203ENST00000546588 CHMP4BP1P59074 171 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 OSTNP61366 133 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 SOX4Q06945 474 aaPredicted RBP8.95□□□□□ -0.98
VPS29-203ENST00000546588 DSC1Q08554 894 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 GRIK3Q13003 919 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 TRPC3Q13507 836 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 SPA17Q15506 151 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 PTPN14Q15678 1187 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 RPS26P11Q5JNZ5 115 aaPredicted RBP8.95□□□□□ -0.98
VPS29-203ENST00000546588 C9orf57Q5W0N0 161 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 SPOPLQ6IQ16 392 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 ALKBH5Q6P6C2 394 aaKnown RBP8.95□□□□□ -0.98
VPS29-203ENST00000546588 TRIM72Q6ZMU5 477 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 SLC24A5Q71RS6 500 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 RTN4RL1Q86UN2 441 aaPredicted RBP8.95□□□□□ -0.98
VPS29-203ENST00000546588 UNC93AQ86WB7 457 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 ECHDC2Q86YB7 292 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 TOP6BLQ8N6T0 577 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 VWCEQ96DN2 955 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 UROC1Q96N76 676 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 FERD3LQ96RJ6 166 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms