RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 WASH3PC4AMC7 463 aa16.51■□□□□ 0.23
CLSTN3-216ENST00000545663 XPOTO43592 962 aaKnown RBP16.51■□□□□ 0.23
CLSTN3-216ENST00000545663 FAM189A1O60320 539 aa16.51■□□□□ 0.23
CLSTN3-216ENST00000545663 ACAT1P24752 427 aaKnown RBP16.51■□□□□ 0.23
CLSTN3-216ENST00000545663 GRK6P43250 576 aa16.51■□□□□ 0.23
CLSTN3-216ENST00000545663 STRN3Q13033 797 aa16.51■□□□□ 0.23
CLSTN3-216ENST00000545663 SF3A1Q15459 793 aaKnown RBP16.51■□□□□ 0.23
CLSTN3-216ENST00000545663 ERICH1Q86X53 443 aa16.51■□□□□ 0.23
CLSTN3-216ENST00000545663 CHPFQ8IZ52 775 aa16.51■□□□□ 0.23
CLSTN3-216ENST00000545663 KCNV2Q8TDN2 545 aa16.51■□□□□ 0.23
CLSTN3-216ENST00000545663 TTC9Q92623 222 aa16.51■□□□□ 0.23
CLSTN3-216ENST00000545663 RUSC1Q9BVN2 902 aa16.51■□□□□ 0.23
CLSTN3-216ENST00000545663 GTF3C4Q9UKN8 822 aa16.51■□□□□ 0.23
CLSTN3-216ENST00000545663 KIAA1024Q9UPX6 916 aa16.51■□□□□ 0.23
CLSTN3-216ENST00000545663 ADRB2P07550 413 aa16.5■□□□□ 0.23
CLSTN3-216ENST00000545663 MAPTP10636 758 aaKnown RBP16.5■□□□□ 0.23
CLSTN3-216ENST00000545663 MCM7P33993 719 aa16.5■□□□□ 0.23
CLSTN3-216ENST00000545663 HNF1BP35680 557 aa16.5■□□□□ 0.23
CLSTN3-216ENST00000545663 KRT2P35908 639 aa16.5■□□□□ 0.23
CLSTN3-216ENST00000545663 USP46P62068 366 aa16.5■□□□□ 0.23
CLSTN3-216ENST00000545663 TSPY1Q01534 308 aa16.5■□□□□ 0.23
CLSTN3-216ENST00000545663 DNAJC3Q13217 504 aa16.5■□□□□ 0.23
CLSTN3-216ENST00000545663 PDIA5Q14554 519 aa16.5■□□□□ 0.23
CLSTN3-216ENST00000545663 NFE2Q16621 373 aaPredicted RBP16.5■□□□□ 0.23
CLSTN3-216ENST00000545663 PKDCCQ504Y2 493 aa16.5■□□□□ 0.23
CLSTN3-216ENST00000545663 ZPBP2Q6X784 338 aa16.5■□□□□ 0.23
CLSTN3-216ENST00000545663 TMEM161BQ8NDZ6 487 aa16.5■□□□□ 0.23
CLSTN3-216ENST00000545663 ZNF274Q96GC6 653 aaPredicted RBP16.5■□□□□ 0.23
CLSTN3-216ENST00000545663 ZFRQ96KR1 1074 aaKnown RBP16.5■□□□□ 0.23
CLSTN3-216ENST00000545663 NRSN2Q9GZP1 204 aa16.5■□□□□ 0.23
CLSTN3-216ENST00000545663 RPF1Q9H9Y2 349 aaKnown RBP16.5■□□□□ 0.23
CLSTN3-216ENST00000545663 DEC1Q9P2X7 70 aa16.5■□□□□ 0.23
CLSTN3-216ENST00000545663 FTSJ1Q9UET6 329 aa16.5■□□□□ 0.23
CLSTN3-216ENST00000545663 NFE2L3Q9Y4A8 694 aa16.5■□□□□ 0.23
CLSTN3-216ENST00000545663 METTL12A8MUP2 240 aa16.49■□□□□ 0.23
CLSTN3-216ENST00000545663 SLC9A3R1O14745 358 aaPredicted RBP16.49■□□□□ 0.23
CLSTN3-216ENST00000545663 HCRTO43612 131 aa16.49■□□□□ 0.23
CLSTN3-216ENST00000545663 EIF5BO60841 1220 aaKnown RBP16.49■□□□□ 0.23
CLSTN3-216ENST00000545663 XBP1P17861 261 aa16.49■□□□□ 0.23
CLSTN3-216ENST00000545663 PAX3P23760 479 aa16.49■□□□□ 0.23
CLSTN3-216ENST00000545663 ADSSP30520 456 aa16.49■□□□□ 0.23
CLSTN3-216ENST00000545663 CCT6AP40227 531 aaKnown RBP16.49■□□□□ 0.23
CLSTN3-216ENST00000545663 SLC7A9P82251 487 aa16.49■□□□□ 0.23
CLSTN3-216ENST00000545663 KCNT1Q5JUK3 1230 aa16.49■□□□□ 0.23
CLSTN3-216ENST00000545663 CPLX2Q6PUV4 134 aaKnown RBP16.49■□□□□ 0.23
CLSTN3-216ENST00000545663 LAYNQ6UX15 382 aa16.49■□□□□ 0.23
CLSTN3-216ENST00000545663 TERB1Q8NA31 727 aa16.49■□□□□ 0.23
CLSTN3-216ENST00000545663 ERMNQ8TAM6 284 aa16.49■□□□□ 0.23
CLSTN3-216ENST00000545663 PKMYT1Q99640 499 aa16.49■□□□□ 0.23
CLSTN3-216ENST00000545663 NTPCRQ9BSD7 190 aaKnown RBP16.49■□□□□ 0.23
CLSTN3-216ENST00000545663 STARD13Q9Y3M8 1113 aa16.49■□□□□ 0.23
CLSTN3-216ENST00000545663 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.49■□□□□ 0.23
CLSTN3-216ENST00000545663 LRRK2Q5S007 2527 aa16.49■□□□□ 0.23
CLSTN3-216ENST00000545663 PRRT4C9JH25 899 aa16.48■□□□□ 0.23
CLSTN3-216ENST00000545663 E9PMD0 336 aa16.48■□□□□ 0.23
CLSTN3-216ENST00000545663 H0Y8X5 98 aa16.48■□□□□ 0.23
CLSTN3-216ENST00000545663 TAF6P49848 677 aa16.48■□□□□ 0.23
CLSTN3-216ENST00000545663 GAD2Q05329 585 aa16.48■□□□□ 0.23
CLSTN3-216ENST00000545663 RAD51AP2Q09MP3 1159 aa16.48■□□□□ 0.23
CLSTN3-216ENST00000545663 HES3Q5TGS1 186 aa16.48■□□□□ 0.23
CLSTN3-216ENST00000545663 SDE2Q6IQ49 451 aa16.48■□□□□ 0.23
CLSTN3-216ENST00000545663 TMEM25Q86YD3 366 aa16.48■□□□□ 0.23
CLSTN3-216ENST00000545663 CADM4Q8NFZ8 388 aa16.48■□□□□ 0.23
CLSTN3-216ENST00000545663 SPIRE2Q8WWL2 714 aa16.48■□□□□ 0.23
CLSTN3-216ENST00000545663 MED8Q96G25 268 aa16.48■□□□□ 0.23
CLSTN3-216ENST00000545663 LGMNQ99538 433 aa16.48■□□□□ 0.23
CLSTN3-216ENST00000545663 GABRG3Q99928 467 aa16.48■□□□□ 0.23
CLSTN3-216ENST00000545663 ABCB6Q9NP58 842 aa16.48■□□□□ 0.23
CLSTN3-216ENST00000545663 DDX19AQ9NUU7 478 aaKnown RBP16.48■□□□□ 0.23
CLSTN3-216ENST00000545663 ANKRD6Q9Y2G4 727 aa16.48■□□□□ 0.23
CLSTN3-216ENST00000545663 ZNF840PA6NDX5 716 aa16.47■□□□□ 0.23
CLSTN3-216ENST00000545663 KPNA7A9QM74 516 aa16.47■□□□□ 0.23
CLSTN3-216ENST00000545663 ABL1P00519 1130 aa16.47■□□□□ 0.23
CLSTN3-216ENST00000545663 GRIK1P39086 918 aa16.47■□□□□ 0.23
CLSTN3-216ENST00000545663 TMEM132DQ14C87 1099 aa16.47■□□□□ 0.23
CLSTN3-216ENST00000545663 TBC1D25Q3MII6 688 aa16.47■□□□□ 0.23
CLSTN3-216ENST00000545663 BTBD8Q5XKL5 378 aa16.47■□□□□ 0.23
CLSTN3-216ENST00000545663 PDCL2Q8N4E4 241 aa16.47■□□□□ 0.23
CLSTN3-216ENST00000545663 LEO1Q8WVC0 666 aaPredicted RBP16.47■□□□□ 0.23
CLSTN3-216ENST00000545663 ITM2CQ9NQX7 267 aa16.47■□□□□ 0.23
CLSTN3-216ENST00000545663 TRPM5Q9NZQ8 1165 aa16.47■□□□□ 0.23
CLSTN3-216ENST00000545663 USP36Q9P275 1121 aaKnown RBP16.47■□□□□ 0.23
CLSTN3-216ENST00000545663 PCDHGA12O60330 932 aa16.46■□□□□ 0.23
CLSTN3-216ENST00000545663 ACTN2P35609 894 aa16.46■□□□□ 0.23
CLSTN3-216ENST00000545663 PDE6CP51160 858 aa16.46■□□□□ 0.23
CLSTN3-216ENST00000545663 AFF3P51826 1226 aaKnown RBP16.46■□□□□ 0.23
CLSTN3-216ENST00000545663 TMPRSS3P57727 454 aa16.46■□□□□ 0.23
CLSTN3-216ENST00000545663 ANO4Q32M45 955 aa16.46■□□□□ 0.23
CLSTN3-216ENST00000545663 INTS6LQ5JSJ4 861 aaKnown RBP16.46■□□□□ 0.23
CLSTN3-216ENST00000545663 PRAMEF14Q5SWL7 426 aa16.46■□□□□ 0.23
CLSTN3-216ENST00000545663 SCARA3Q6AZY7 606 aa16.46■□□□□ 0.23
CLSTN3-216ENST00000545663 RINT1Q6NUQ1 792 aa16.46■□□□□ 0.23
CLSTN3-216ENST00000545663 C1orf186Q6ZWK4 172 aa16.46■□□□□ 0.23
CLSTN3-216ENST00000545663 SKAP1Q86WV1 359 aa16.46■□□□□ 0.23
CLSTN3-216ENST00000545663 BICD1Q96G01 975 aa16.46■□□□□ 0.23
CLSTN3-216ENST00000545663 TRIM9Q9C026 710 aa16.46■□□□□ 0.23
CLSTN3-216ENST00000545663 CCSER1Q9C0I3 900 aa16.46■□□□□ 0.23
CLSTN3-216ENST00000545663 MKRN2Q9H000 416 aaKnown RBP16.46■□□□□ 0.23
CLSTN3-216ENST00000545663 DDX43Q9NXZ2 648 aaKnown RBP16.46■□□□□ 0.23
CLSTN3-216ENST00000545663 DPP3Q9NY33 737 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms