RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	NCK2	O43639	380 aa		12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	KRT86	O43790	486 aa		12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	ZBED1	O96006	694 aa		12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	HNRNPA1	P09651	372 aa	Known RBP eCLIP	12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	TMEM253	P0C7T8	217 aa		12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	GABRB2	P47870	512 aa		12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	NAP1L1	P55209	391 aa	Known RBP	12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	KIF5A	Q12840	1032 aa		12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	ZNF268	Q14587	947 aa	Predicted RBP	12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	ARHGAP29	Q52LW3	1261 aa		12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	C2CD6	Q53TS8	623 aa		12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	RAB41	Q5JT25	222 aa		12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	HABP4	Q5JVS0	413 aa	Known RBP	12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	DCUN1D2	Q6PH85	259 aa		12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	FAM183BP	Q6ZVS7	135 aa		12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	GPRIN1	Q7Z2K8	1008 aa		12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	TMEM110	Q86TL2	294 aa		12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	ARHGAP18	Q8N392	663 aa		12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	EFHB	Q8N7U6	833 aa		12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	STKLD1	Q8NE28	680 aa		12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	PDZD8	Q8NEN9	1154 aa		12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	OLIG1	Q8TAK6	271 aa		12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	THAP2	Q9H0W7	228 aa		12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	PIDD1	Q9HB75	910 aa		12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	TMEM30A	Q9NV96	361 aa		12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	PARVA	Q9NVD7	372 aa		12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	CTTNBP2NL	Q9P2B4	639 aa		12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	ADGRG1	Q9Y653	693 aa		12.5	□□□□□ -0.41
DDB1-223	ENST00000543658	HELZ	P42694	1942 aa	Known RBP	12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	HHLA1	C9JL84	531 aa		12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	CAPN9	O14815	690 aa		12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	ZNF263	O14978	683 aa		12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	CCL16	O15467	120 aa		12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	ATMIN	O43313	823 aa	Predicted RBP	12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	FGF19	O95750	216 aa		12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	USP17L7	P0C7H9	530 aa		12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	RRM1	P23921	792 aa		12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	GSC	P56915	257 aa	Predicted RBP	12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	MRPS5	P82675	430 aa	Known RBP	12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	SLC6A3	Q01959	620 aa		12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	HYAL1	Q12794	435 aa		12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	EFHC1	Q5JVL4	640 aa		12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	PHLDB2	Q86SQ0	1253 aa		12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	XYLT1	Q86Y38	959 aa		12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	DNAAF5	Q86Y56	855 aa		12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	RHOT2	Q8IXI1	618 aa		12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	C3orf20	Q8ND61	904 aa		12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	SCAMP5	Q8TAC9	235 aa		12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	IRGQ	Q8WZA9	623 aa		12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	PSMG2	Q969U7	264 aa		12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	PACSIN1	Q9BY11	444 aa		12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	AVEN	Q9NQS1	362 aa	Predicted RBP	12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	ASAH2	Q9NR71	780 aa		12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	TLR8	Q9NR97	1041 aa	Known RBP	12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	METTL5	Q9NRN9	209 aa	Known RBP	12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	TJP2	Q9UDY2	1190 aa		12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	NENF	Q9UMX5	172 aa		12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	MTCH2	Q9Y6C9	303 aa		12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	PRRC2B	Q5JSZ5	2229 aa	Known RBP	12.49	□□□□□ -0.41
DDB1-223	ENST00000543658	LAMA2	P24043	3122 aa	Known RBP	12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	NCAN	O14594	1321 aa		12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	TNFRSF10B	O14763	440 aa		12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	PAPSS1	O43252	624 aa	Predicted RBP	12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	HSF2BP	O75031	334 aa		12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	ABL1	P00519	1130 aa		12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	RALA	P11233	206 aa		12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	KRT3	P12035	628 aa		12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	SCNN1A	P37088	669 aa		12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	NOP2	P46087	812 aa	Known RBP	12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	PPP3CC	P48454	512 aa		12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	RPL34	P49207	117 aa	Known RBP	12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	PSEN1	P49768	467 aa		12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	DAOA	P59103	153 aa		12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	MTMR3	Q13615	1198 aa		12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	IFI16	Q16666	785 aa	Known RBP	12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	PABPC1L	Q4VXU2	614 aa	Known RBP	12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	BTBD8	Q5XKL5	378 aa		12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	SCUBE3	Q8IX30	993 aa		12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	SCML4	Q8N228	414 aa		12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	LEMD2	Q8NC56	503 aa		12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	ZNF564	Q8TBZ8	553 aa	Predicted RBP	12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	RFFL	Q8WZ73	363 aa		12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	OVCA2	Q8WZ82	227 aa		12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	TRMT2B	Q96GJ1	504 aa	Known RBP	12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	CORO1B	Q9BR76	489 aa		12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	NUP85	Q9BW27	656 aa		12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	ASNSD1	Q9NWL6	643 aa		12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	CLDND1	Q9NY35	253 aa		12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	TRPM5	Q9NZQ8	1165 aa		12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	UVRAG	Q9P2Y5	699 aa		12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	SCML2	Q9UQR0	700 aa		12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	PPP2R2C	Q9Y2T4	447 aa		12.48	□□□□□ -0.41
DDB1-223	ENST00000543658	RANBP2	P49792	3224 aa	Known RBP	12.47	□□□□□ -0.41
DDB1-223	ENST00000543658	CCDC195	A0A1B0GUA6	201 aa		12.47	□□□□□ -0.41
DDB1-223	ENST00000543658	GOLGA6L9	A6NEM1	432 aa		12.47	□□□□□ -0.41
DDB1-223	ENST00000543658	RFPL2	O75678	378 aa		12.47	□□□□□ -0.41
DDB1-223	ENST00000543658	LTF	P02788	710 aa		12.47	□□□□□ -0.41
DDB1-223	ENST00000543658	GLI1	P08151	1106 aa		12.47	□□□□□ -0.41
DDB1-223	ENST00000543658	MYL4	P12829	197 aa		12.47	□□□□□ -0.41
DDB1-223	ENST00000543658	FOSL2	P15408	326 aa		12.47	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms