RNA–Protein interactions for RNA: ENST00000542838.5

DDX11-223, Transcript of DEAD/H-box helicase 11, human

APPRIS P1 TSL 1 (best) BASIC

Gene DDX11, Length 3,079 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX11-223	ENST00000542838	CDHR1	Q96JP9	859 aa		13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	TRPC5	Q9UL62	973 aa	Predicted RBP	13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	GOLGB1	Q14789	3259 aa	Known RBP	13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	CCDC195	A0A1B0GUA6	201 aa		13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	ITGBL1	O95965	494 aa	Predicted RBP	13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	KIT	P10721	976 aa		13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	HMGB2	P26583	209 aa	Known RBP	13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	MIP	P30301	263 aa		13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	ERF	P50548	548 aa		13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	BST1	Q10588	318 aa		13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	RBBP5	Q15291	538 aa	Known RBP	13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	SCUBE1	Q8IWY4	988 aa		13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	TRIM42	Q8IWZ5	723 aa		13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	RBM15B	Q8NDT2	890 aa	Known RBP	13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	FNIP1	Q8TF40	1166 aa		13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	E2F7	Q96AV8	911 aa		13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	ACAP3	Q96P50	834 aa		13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	CIB2	O75838	187 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	ATG7	O95352	703 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	SNRPA	P09012	282 aa	Known RBP	13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	GSTA2	P09210	222 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	STIP1	P31948	543 aa	Known RBP	13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	ROR2	Q01974	943 aa	Known RBP	13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	KDSR	Q06136	332 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	MMRN1	Q13201	1228 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	KCNJ11	Q14654	390 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	DUOXA2	Q1HG44	320 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	ZNF699	Q32M78	642 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	C6orf163	Q5TEZ5	329 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	WDR78	Q5VTH9	848 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	ATG16L1	Q676U5	607 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	SNRNP48	Q6IEG0	339 aa	Known RBP	13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	MFN1	Q8IWA4	741 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	ZNF526	Q8TF50	670 aa	Predicted RBP	13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	GATA6	Q92908	595 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	SLC13A1	Q9BZW2	595 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	TMEM134	Q9H6X4	195 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	WDR35	Q9P2L0	1181 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	PLLP	Q9Y342	182 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	CAPN14	A8MX76	684 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838		F8W8V4	182 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	SPECC1L-ADORA2A	F8WAN1	911 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	KRT37	O76014	449 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	RNF8	O76064	485 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	HIRA	P54198	1017 aa	Predicted RBP	13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	TFAM	Q00059	246 aa	Known RBP	13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	HSF5	Q4G112	596 aa	Predicted RBP	13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	KCNN1	Q92952	543 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	IFT43	Q96FT9	208 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	C7orf26	Q96N11	449 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	THTPA	Q9BU02	230 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	ZNF395	Q9H8N7	513 aa	Predicted RBP	13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	MARCO	Q9UEW3	520 aa	Predicted RBP	13.46	□□□□□ -0.25
DDX11-223	ENST00000542838	TTLL3	Q9Y4R7	772 aa		13.46	□□□□□ -0.25
DDX11-223	ENST00000542838		H7C0C1	242 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	TRUB2	O95900	331 aa	Known RBP	13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	ANPEP	P15144	967 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	ATP5O	P48047	213 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	CAPS	Q13938	189 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	CHI3L2	Q15782	390 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	KRT27	Q7Z3Y8	459 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	NET1	Q7Z628	596 aa	Predicted RBP	13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	GALNT15	Q8N3T1	639 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	FLAD1	Q8NFF5	587 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	CMAS	Q8NFW8	434 aa	Predicted RBP	13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	CLPTM1L	Q96KA5	538 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	CPXM1	Q96SM3	734 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	WWP1	Q9H0M0	922 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	RSAD1	Q9HA92	442 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	PNPLA8	Q9NP80	782 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	RAB6B	Q9NRW1	208 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	NXF1	Q9UBU9	619 aa	Known RBP	13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	TAGLN3	Q9UI15	199 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	USP18	Q9UMW8	372 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	CXorf49	A8MYA2	514 aa	Predicted RBP	13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	UBTFL6	P0CB48	400 aa	Predicted RBP	13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	GCLC	P48506	637 aa	Predicted RBP	13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	POLE2	P56282	527 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	SP2	Q02086	613 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	NOMO1	Q15155	1222 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	RIPOR1	Q6ZS17	1223 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	XYLT1	Q86Y38	959 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	NUDCD3	Q8IVD9	361 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	TRAPPC9	Q96Q05	1148 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	MAFB	Q9Y5Q3	323 aa	Predicted RBP	13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	SPATA31C2	B4DYI2	1134 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	CHAD	O15335	359 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	ADCY3	O60266	1144 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	TM7SF2	O76062	418 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	ERBB2	P04626	1255 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	ASPA	P45381	313 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	RAP1GAP	P47736	663 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	ALDH18A1	P54886	795 aa	Known RBP	13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	AQP5	P55064	265 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	CDH6	P55285	790 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	INHBE	P58166	350 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	YWHAZ	P63104	245 aa	Known RBP	13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	BIRC2	Q13490	618 aa		13.45	□□□□□ -0.26
DDX11-223	ENST00000542838	BMPR2	Q13873	1038 aa		13.45	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms