RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 CCDC39Q9UFE4 941 aa18.99■□□□□ 0.63
CLSTN3-214ENST00000542663 ADH1CP00326 375 aa18.98■□□□□ 0.63
CLSTN3-214ENST00000542663 ABL1P00519 1130 aa18.98■□□□□ 0.63
CLSTN3-214ENST00000542663 IDEP14735 1019 aa18.98■□□□□ 0.63
CLSTN3-214ENST00000542663 TNFRSF4P43489 277 aa18.98■□□□□ 0.63
CLSTN3-214ENST00000542663 FAM193AP78312 1265 aa18.98■□□□□ 0.63
CLSTN3-214ENST00000542663 SIM1P81133 766 aaPredicted RBP18.98■□□□□ 0.63
CLSTN3-214ENST00000542663 ALCAMQ13740 583 aa18.98■□□□□ 0.63
CLSTN3-214ENST00000542663 LY6G5CQ5SRR4 150 aa18.98■□□□□ 0.63
CLSTN3-214ENST00000542663 RRAGBQ5VZM2 374 aa18.98■□□□□ 0.63
CLSTN3-214ENST00000542663 LRSAM1Q6UWE0 723 aa18.98■□□□□ 0.63
CLSTN3-214ENST00000542663 CBWD2Q8IUF1 395 aa18.98■□□□□ 0.63
CLSTN3-214ENST00000542663 CLIC6Q96NY7 704 aa18.98■□□□□ 0.63
CLSTN3-214ENST00000542663 EHD2Q9NZN4 543 aa18.98■□□□□ 0.63
CLSTN3-214ENST00000542663 HCN2Q9UL51 889 aa18.98■□□□□ 0.63
CLSTN3-214ENST00000542663 SMC3Q9UQE7 1217 aa18.98■□□□□ 0.63
CLSTN3-214ENST00000542663 TNNC2P02585 160 aa18.97■□□□□ 0.63
CLSTN3-214ENST00000542663 CFIP05156 583 aa18.97■□□□□ 0.63
CLSTN3-214ENST00000542663 MBL2P11226 248 aaPredicted RBP18.97■□□□□ 0.63
CLSTN3-214ENST00000542663 HOXD12P35452 270 aa18.97■□□□□ 0.63
CLSTN3-214ENST00000542663 DPP6P42658 865 aa18.97■□□□□ 0.63
CLSTN3-214ENST00000542663 HS2ST1Q7LGA3 356 aa18.97■□□□□ 0.63
CLSTN3-214ENST00000542663 ETFBKMTQ8IXQ9 262 aa18.97■□□□□ 0.63
CLSTN3-214ENST00000542663 PGBD3Q8N328 593 aa18.97■□□□□ 0.63
CLSTN3-214ENST00000542663 GLIS3Q8NEA6 775 aa18.97■□□□□ 0.63
CLSTN3-214ENST00000542663 MMS19Q96T76 1030 aa18.97■□□□□ 0.63
CLSTN3-214ENST00000542663 DPEP3Q9H4B8 488 aa18.97■□□□□ 0.63
CLSTN3-214ENST00000542663 CAPN10Q9HC96 672 aa18.97■□□□□ 0.63
CLSTN3-214ENST00000542663 PANK4Q9NVE7 773 aa18.97■□□□□ 0.63
CLSTN3-214ENST00000542663 SLC6A14Q9UN76 642 aa18.97■□□□□ 0.63
CLSTN3-214ENST00000542663 LAMA5O15230 3695 aa18.97■□□□□ 0.63
CLSTN3-214ENST00000542663 A0A087X0B3 334 aa18.96■□□□□ 0.63
CLSTN3-214ENST00000542663 CST3P01034 146 aaPredicted RBP18.96■□□□□ 0.63
CLSTN3-214ENST00000542663 CAPNS1P04632 268 aa18.96■□□□□ 0.63
CLSTN3-214ENST00000542663 GABRG2P18507 467 aa18.96■□□□□ 0.63
CLSTN3-214ENST00000542663 IFRD2Q12894 506 aaPredicted RBP18.96■□□□□ 0.63
CLSTN3-214ENST00000542663 BYSLQ13895 437 aaKnown RBP18.96■□□□□ 0.63
CLSTN3-214ENST00000542663 DUOXA1Q1HG43 343 aa18.96■□□□□ 0.63
CLSTN3-214ENST00000542663 DUOXA2Q1HG44 320 aa18.96■□□□□ 0.63
CLSTN3-214ENST00000542663 TDRD10Q5VZ19 366 aaKnown RBP18.96■□□□□ 0.63
CLSTN3-214ENST00000542663 DDX42Q86XP3 938 aaKnown RBP eCLIP18.96■□□□□ 0.63
CLSTN3-214ENST00000542663 WDR49Q8IV35 697 aa18.96■□□□□ 0.63
CLSTN3-214ENST00000542663 DEFB119Q8N690 84 aa18.96■□□□□ 0.63
CLSTN3-214ENST00000542663 SLITRK1Q96PX8 696 aa18.96■□□□□ 0.63
CLSTN3-214ENST00000542663 ZNF518BQ9C0D4 1074 aa18.96■□□□□ 0.63
CLSTN3-214ENST00000542663 TBC1D14Q9P2M4 693 aa18.96■□□□□ 0.63
CLSTN3-214ENST00000542663 LHX6Q9UPM6 363 aa18.96■□□□□ 0.63
CLSTN3-214ENST00000542663 R3HCC1Q9Y3T6 440 aaKnown RBP18.96■□□□□ 0.63
CLSTN3-214ENST00000542663 SRPRBQ9Y5M8 271 aaKnown RBP18.96■□□□□ 0.63
CLSTN3-214ENST00000542663 ANKRD11Q6UB99 2663 aaPredicted RBP18.96■□□□□ 0.63
CLSTN3-214ENST00000542663 LOC400499M0QZD8 3231 aa18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 FASNP49327 2511 aaKnown RBP18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 E2F8A0AVK6 867 aa18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 FAM221BA6H8Z2 402 aa18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 ZNF233A6NK53 670 aa18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 TAF4O00268 1085 aa18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 CLDN5O00501 218 aa18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 KIAA0391O15091 583 aaKnown RBP18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 AP5Z1O43299 807 aa18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 COCHO43405 550 aa18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 TACC1O75410 805 aa18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 SERPINF2P08697 491 aa18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 PTPN1P18031 435 aaKnown RBP18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 HOXD13P35453 343 aa18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 GNL1P36915 607 aaPredicted RBP18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 RPL6Q02878 288 aaKnown RBP18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 GAD2Q05329 585 aa18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 ACAP1Q15027 740 aa18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 SURF1Q15526 300 aa18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 TRAPPC11Q7Z392 1133 aa18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 MIB1Q86YT6 1006 aa18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 ZNF513Q8N8E2 541 aaPredicted RBP18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 NAT16Q8N8M0 369 aa18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 OR2I1PQ8NGU4 316 aa18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 WBP2Q969T9 261 aa18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 GTPBP2Q9BX10 602 aaKnown RBP18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 B3GNT5Q9BYG0 378 aa18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 CALCOCO1Q9P1Z2 691 aa18.95■□□□□ 0.62
CLSTN3-214ENST00000542663 TRIM24O15164 1050 aa18.94■□□□□ 0.62
CLSTN3-214ENST00000542663 TULP3O75386 442 aa18.94■□□□□ 0.62
CLSTN3-214ENST00000542663 CD59P13987 128 aa18.94■□□□□ 0.62
CLSTN3-214ENST00000542663 GFPT1Q06210 699 aaPredicted RBP18.94■□□□□ 0.62
CLSTN3-214ENST00000542663 SLC41A1Q8IVJ1 513 aa18.94■□□□□ 0.62
CLSTN3-214ENST00000542663 CHCHD4Q8N4Q1 142 aa18.94■□□□□ 0.62
CLSTN3-214ENST00000542663 OR6B3Q8NGW1 331 aa18.94■□□□□ 0.62
CLSTN3-214ENST00000542663 CEP76Q8TAP6 659 aa18.94■□□□□ 0.62
CLSTN3-214ENST00000542663 HPS3Q969F9 1004 aa18.94■□□□□ 0.62
CLSTN3-214ENST00000542663 OTUB2Q96DC9 234 aa18.94■□□□□ 0.62
CLSTN3-214ENST00000542663 ELOVL4Q9GZR5 314 aa18.94■□□□□ 0.62
CLSTN3-214ENST00000542663 SNX25Q9H3E2 840 aa18.94■□□□□ 0.62
CLSTN3-214ENST00000542663 CD248Q9HCU0 757 aa18.94■□□□□ 0.62
CLSTN3-214ENST00000542663 HSPBP1Q9NZL4 362 aa18.94■□□□□ 0.62
CLSTN3-214ENST00000542663 A0A1W2PQF6 199 aa18.93■□□□□ 0.62
CLSTN3-214ENST00000542663 TBC1D3BA6NDS4 549 aa18.93■□□□□ 0.62
CLSTN3-214ENST00000542663 HOXC11O43248 304 aaPredicted RBP18.93■□□□□ 0.62
CLSTN3-214ENST00000542663 YWHAQP27348 245 aa18.93■□□□□ 0.62
CLSTN3-214ENST00000542663 ATXN3P54252 364 aaPredicted RBP18.93■□□□□ 0.62
CLSTN3-214ENST00000542663 ZNF33AQ06730 810 aa18.93■□□□□ 0.62
CLSTN3-214ENST00000542663 RAB44Q7Z6P3 723 aaPredicted RBP18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms