RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 XIRP2A4UGR9 3374 aa18.02■□□□□ 0.48
LIG1-204ENST00000542460 CUL9Q8IWT3 2517 aa18.02■□□□□ 0.47
LIG1-204ENST00000542460 DDX3XO00571 662 aaKnown RBP eCLIP18.02■□□□□ 0.472e-12■■■□□ 16.8
LIG1-204ENST00000542460 GABBR2O75899 941 aa18.02■□□□□ 0.47
LIG1-204ENST00000542460 FBXO21O94952 628 aa18.02■□□□□ 0.47
LIG1-204ENST00000542460 GZMAP12544 262 aa18.02■□□□□ 0.47
LIG1-204ENST00000542460 GABRR2P28476 465 aa18.02■□□□□ 0.47
LIG1-204ENST00000542460 CDC25CP30307 473 aa18.02■□□□□ 0.47
LIG1-204ENST00000542460 EIF4A3P38919 411 aaKnown RBP18.02■□□□□ 0.47
LIG1-204ENST00000542460 NSFP46459 744 aaKnown RBP18.02■□□□□ 0.47
LIG1-204ENST00000542460 PPP3CCP48454 512 aa18.02■□□□□ 0.47
LIG1-204ENST00000542460 NTHL1P78549 312 aa18.02■□□□□ 0.47
LIG1-204ENST00000542460 CENPCQ03188 943 aa18.02■□□□□ 0.47
LIG1-204ENST00000542460 MAPK8IP2Q13387 824 aaPredicted RBP18.02■□□□□ 0.47
LIG1-204ENST00000542460 SMAD4Q13485 552 aaKnown RBP18.02■□□□□ 0.47
LIG1-204ENST00000542460 LEXMQ3ZCV2 418 aa18.02■□□□□ 0.47
LIG1-204ENST00000542460 PM20D1Q6GTS8 502 aa18.02■□□□□ 0.47
LIG1-204ENST00000542460 PPP1R2P3Q6NXS1 205 aa18.02■□□□□ 0.47
LIG1-204ENST00000542460 CCDC186Q7Z3E2 898 aa18.02■□□□□ 0.47
LIG1-204ENST00000542460 SCML4Q8N228 414 aa18.02■□□□□ 0.47
LIG1-204ENST00000542460 PDZD8Q8NEN9 1154 aa18.02■□□□□ 0.47
LIG1-204ENST00000542460 IPO4Q8TEX9 1081 aaKnown RBP18.02■□□□□ 0.47
LIG1-204ENST00000542460 SUSD6Q92537 303 aa18.02■□□□□ 0.47
LIG1-204ENST00000542460 GCNAQ96QF7 691 aa18.02■□□□□ 0.47
LIG1-204ENST00000542460 CHP1Q99653 195 aa18.02■□□□□ 0.47
LIG1-204ENST00000542460 ULBP1Q9BZM6 244 aa18.02■□□□□ 0.47
LIG1-204ENST00000542460 MIS12Q9H081 205 aa18.02■□□□□ 0.47
LIG1-204ENST00000542460 SYNCQ9H7C4 482 aa18.02■□□□□ 0.47
LIG1-204ENST00000542460 IL21Q9HBE4 155 aa18.02■□□□□ 0.47
LIG1-204ENST00000542460 CNGB3Q9NQW8 809 aa18.02■□□□□ 0.47
LIG1-204ENST00000542460 CDH22Q9UJ99 828 aa18.02■□□□□ 0.47
LIG1-204ENST00000542460 USP15Q9Y4E8 981 aaPredicted RBP18.02■□□□□ 0.47
LIG1-204ENST00000542460 E5RJQ4 531 aa18.01■□□□□ 0.47
LIG1-204ENST00000542460 PIK3R2O00459 728 aa18.01■□□□□ 0.47
LIG1-204ENST00000542460 F11P03951 625 aa18.01■□□□□ 0.47
LIG1-204ENST00000542460 USP17L7P0C7H9 530 aa18.01■□□□□ 0.47
LIG1-204ENST00000542460 CBX2Q14781 532 aaPredicted RBP18.01■□□□□ 0.47
LIG1-204ENST00000542460 PTPN20Q4JDL3 420 aa18.01■□□□□ 0.47
LIG1-204ENST00000542460 ACAD10Q6JQN1 1059 aa18.01■□□□□ 0.47
LIG1-204ENST00000542460 GAREM2Q75VX8 874 aa18.01■□□□□ 0.47
LIG1-204ENST00000542460 SCUBE3Q8IX30 993 aa18.01■□□□□ 0.47
LIG1-204ENST00000542460 C18orf8Q96DM3 657 aa18.01■□□□□ 0.47
LIG1-204ENST00000542460 CCDC42Q96M95 316 aa18.01■□□□□ 0.47
LIG1-204ENST00000542460 DEF6Q9H4E7 631 aa18.01■□□□□ 0.47
LIG1-204ENST00000542460 NHEJ1Q9H9Q4 299 aaPredicted RBP18.01■□□□□ 0.47
LIG1-204ENST00000542460 TRPM5Q9NZQ8 1165 aa18.01■□□□□ 0.47
LIG1-204ENST00000542460 MRPS23Q9Y3D9 190 aaKnown RBP18.01■□□□□ 0.47
LIG1-204ENST00000542460 NCANO14594 1321 aa18.01■□□□□ 0.47
LIG1-204ENST00000542460 CLUHO75153 1309 aa18.01■□□□□ 0.47
LIG1-204ENST00000542460 MBTPS2O43462 519 aa18■□□□□ 0.47
LIG1-204ENST00000542460 MMP8P22894 467 aa18■□□□□ 0.47
LIG1-204ENST00000542460 FSHRP23945 695 aa18■□□□□ 0.47
LIG1-204ENST00000542460 CCR2P41597 374 aa18■□□□□ 0.47
LIG1-204ENST00000542460 GABRB2P47870 512 aa18■□□□□ 0.47
LIG1-204ENST00000542460 SLC5A9Q2M3M2 681 aa18■□□□□ 0.47
LIG1-204ENST00000542460 PUS10Q3MIT2 529 aaKnown RBP18■□□□□ 0.47
LIG1-204ENST00000542460 PRSS36Q5K4E3 855 aa18■□□□□ 0.47
LIG1-204ENST00000542460 TMEM150AQ86TG1 271 aa18■□□□□ 0.47
LIG1-204ENST00000542460 MON1AQ86VX9 555 aa18■□□□□ 0.47
LIG1-204ENST00000542460 PHF13Q86YI8 300 aaPredicted RBP18■□□□□ 0.47
LIG1-204ENST00000542460 ATXN3LQ9H3M9 355 aa18■□□□□ 0.47
LIG1-204ENST00000542460 TLR8Q9NR97 1041 aaKnown RBP18■□□□□ 0.47
LIG1-204ENST00000542460 THEGQ9P2T0 379 aa18■□□□□ 0.47
LIG1-204ENST00000542460 CHORDC1Q9UHD1 332 aaPredicted RBP18■□□□□ 0.47
LIG1-204ENST00000542460 A0A087X0T9 212 aa17.99■□□□□ 0.47
LIG1-204ENST00000542460 A0A1W2PRU2 124 aa17.99■□□□□ 0.47
LIG1-204ENST00000542460 GRXCR2A6NFK2 248 aa17.99■□□□□ 0.47
LIG1-204ENST00000542460 PAPSS1O43252 624 aaPredicted RBP17.99■□□□□ 0.47
LIG1-204ENST00000542460 SART1O43290 800 aaKnown RBP17.99■□□□□ 0.47
LIG1-204ENST00000542460 ERBB2P04626 1255 aa17.99■□□□□ 0.47
LIG1-204ENST00000542460 FAM228BP0C875 321 aa17.99■□□□□ 0.47
LIG1-204ENST00000542460 FECHP22830 423 aa17.99■□□□□ 0.47
LIG1-204ENST00000542460 PSEN1P49768 467 aa17.99■□□□□ 0.47
LIG1-204ENST00000542460 DAOAP59103 153 aa17.99■□□□□ 0.47
LIG1-204ENST00000542460 MRPS5P82675 430 aaKnown RBP17.99■□□□□ 0.47
LIG1-204ENST00000542460 ASTE1Q2TB18 679 aaPredicted RBP17.99■□□□□ 0.47
LIG1-204ENST00000542460 ZDHHC17Q8IUH5 632 aa17.99■□□□□ 0.47
LIG1-204ENST00000542460 TMTC1Q8IUR5 882 aa17.99■□□□□ 0.47
LIG1-204ENST00000542460 ARHGAP18Q8N392 663 aa17.99■□□□□ 0.47
LIG1-204ENST00000542460 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.99■□□□□ 0.47
LIG1-204ENST00000542460 IRGQQ8WZA9 623 aa17.99■□□□□ 0.47
LIG1-204ENST00000542460 TCEAL4Q96EI5 215 aa17.99■□□□□ 0.47
LIG1-204ENST00000542460 GMIPQ9P107 970 aa17.99■□□□□ 0.47
LIG1-204ENST00000542460 TJP2Q9UDY2 1190 aa17.99■□□□□ 0.47
LIG1-204ENST00000542460 ZNF840PA6NDX5 716 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 TMCO5BA8MYB1 307 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 AKR1B10O60218 316 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 RTN2O75298 545 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 ZDHHC11BP0C7U3 371 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 C1QBPQ07021 282 aaKnown RBP17.98■□□□□ 0.47
LIG1-204ENST00000542460 SLC18A3Q16572 532 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 SNX30Q5VWJ9 437 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 MMS22LQ6ZRQ5 1243 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 SHKBP1Q8TBC3 707 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 MRPS31Q92665 395 aaKnown RBP17.98■□□□□ 0.47
LIG1-204ENST00000542460 BAG1Q99933 345 aaPredicted RBP17.98■□□□□ 0.47
LIG1-204ENST00000542460 POMKQ9H5K3 350 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 TAS2R14Q9NYV8 317 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 ADAM22Q9P0K1 906 aa17.98■□□□□ 0.47
LIG1-204ENST00000542460 STRIP2Q9ULQ0 834 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms