RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 SLC35B2Q8TB61 432 aa13.08□□□□□ -0.32
RNF4-222ENST00000541204 TCP10LQ8TDR4 215 aa13.08□□□□□ -0.32
RNF4-222ENST00000541204 STK32AQ8WU08 396 aa13.08□□□□□ -0.32
RNF4-222ENST00000541204 CPT1BQ92523 772 aa13.08□□□□□ -0.32
RNF4-222ENST00000541204 NAF1Q96HR8 494 aaKnown RBP13.08□□□□□ -0.32
RNF4-222ENST00000541204 NUDCD1Q96RS6 583 aa13.08□□□□□ -0.32
RNF4-222ENST00000541204 PAFAH2Q99487 392 aa13.08□□□□□ -0.32
RNF4-222ENST00000541204 WDR83Q9BRX9 315 aaKnown RBP13.08□□□□□ -0.32
RNF4-222ENST00000541204 ELOVL4Q9GZR5 314 aa13.08□□□□□ -0.32
RNF4-222ENST00000541204 SLC17A7Q9P2U7 560 aa13.08□□□□□ -0.32
RNF4-222ENST00000541204 HES2Q9Y543 173 aa13.08□□□□□ -0.32
RNF4-222ENST00000541204 M0QYV0 167 aa13.07□□□□□ -0.32
RNF4-222ENST00000541204 ADCY6O43306 1168 aa13.07□□□□□ -0.32
RNF4-222ENST00000541204 ENTPD5O75356 428 aa13.07□□□□□ -0.32
RNF4-222ENST00000541204 IL18RAPO95256 599 aa13.07□□□□□ -0.32
RNF4-222ENST00000541204 KRT3P12035 628 aa13.07□□□□□ -0.32
RNF4-222ENST00000541204 EIF4BP23588 611 aaKnown RBP13.07□□□□□ -0.32
RNF4-222ENST00000541204 RASSF2P50749 326 aa13.07□□□□□ -0.32
RNF4-222ENST00000541204 OTUD4Q01804 1114 aaKnown RBP13.07□□□□□ -0.32
RNF4-222ENST00000541204 FYB2Q5VWT5 728 aa13.07□□□□□ -0.32
RNF4-222ENST00000541204 GPR142Q7Z601 462 aa13.07□□□□□ -0.32
RNF4-222ENST00000541204 ACTL9Q8TC94 416 aa13.07□□□□□ -0.32
RNF4-222ENST00000541204 HPDLQ96IR7 371 aa13.07□□□□□ -0.32
RNF4-222ENST00000541204 METTL5Q9NRN9 209 aaKnown RBP13.07□□□□□ -0.32
RNF4-222ENST00000541204 TCRBV7S3A2A0A539 114 aa13.07□□□□□ -0.32
RNF4-222ENST00000541204 C3orf70A6NLC5 250 aaPredicted RBP13.07□□□□□ -0.32
RNF4-222ENST00000541204 C2CD2LO14523 706 aa13.07□□□□□ -0.32
RNF4-222ENST00000541204 SMNDC1O75940 238 aaKnown RBP eCLIP13.07□□□□□ -0.32
RNF4-222ENST00000541204 PSEN1P49768 467 aa13.07□□□□□ -0.32
RNF4-222ENST00000541204 PIGHQ14442 188 aaPredicted RBP13.07□□□□□ -0.32
RNF4-222ENST00000541204 TMEM132DQ14C87 1099 aa13.07□□□□□ -0.32
RNF4-222ENST00000541204 RASA2Q15283 850 aa13.07□□□□□ -0.32
RNF4-222ENST00000541204 GRIK4Q16099 956 aa13.07□□□□□ -0.32
RNF4-222ENST00000541204 SLC45A4Q5BKX6 768 aa13.07□□□□□ -0.32
RNF4-222ENST00000541204 PPP1R15BQ5SWA1 713 aa13.07□□□□□ -0.32
RNF4-222ENST00000541204 ILDR2Q71H61 639 aa13.07□□□□□ -0.32
RNF4-222ENST00000541204 CLNKQ7Z7G1 428 aa13.07□□□□□ -0.32
RNF4-222ENST00000541204 PPIL6Q8IXY8 311 aa13.07□□□□□ -0.32
RNF4-222ENST00000541204 SLC4A11Q8NBS3 891 aa13.07□□□□□ -0.32
RNF4-222ENST00000541204 FBXO36Q8NEA4 188 aa13.07□□□□□ -0.32
RNF4-222ENST00000541204 DENND2DQ9H6A0 471 aaPredicted RBP13.07□□□□□ -0.32
RNF4-222ENST00000541204 SLC24A3Q9HC58 644 aa13.07□□□□□ -0.32
RNF4-222ENST00000541204 DDX56Q9NY93 547 aaKnown RBP13.07□□□□□ -0.32
RNF4-222ENST00000541204 TSPAN1O60635 241 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 CST8O60676 142 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 GRAP2O75791 330 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 ERBB2P04626 1255 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 PHBP35232 272 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 PTPN7P35236 360 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 ARL4CP56559 192 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 CTC1Q2NKJ3 1217 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 GLRA4Q5JXX5 417 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 ADGRD1Q6QNK2 874 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 ZNF276Q8N554 614 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 C12orf29Q8N999 325 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 NAT8LQ8N9F0 302 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 ATP11CQ8NB49 1132 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 OR6J1Q8NGC5 347 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 KIF12Q96FN5 646 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 APOL6Q9BWW8 343 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 PPCSQ9HAB8 311 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 VTA1Q9NP79 307 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 KANSL3Q9P2N6 904 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 A0A0G2JND7 137 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 MCF2P10911 925 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 PTPN4P29074 926 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 YWHAEP62258 255 aaKnown RBP13.06□□□□□ -0.32
RNF4-222ENST00000541204 PTPN11Q06124 597 aaPredicted RBP13.06□□□□□ -0.32
RNF4-222ENST00000541204 TAF5Q15542 800 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 MARCH8Q5T0T0 291 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 PCGF5Q86SE9 256 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 MZB1Q8WU39 189 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 PTPRN2Q92932 1015 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 MIPEPQ99797 713 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 PCDHGC3Q9UN70 934 aa13.06□□□□□ -0.32
RNF4-222ENST00000541204 TRAFD1O14545 582 aaPredicted RBP13.05□□□□□ -0.32
RNF4-222ENST00000541204 DYNC1LI2O43237 492 aaPredicted RBP13.05□□□□□ -0.32
RNF4-222ENST00000541204 MICAL2O94851 1124 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 CD48P09326 243 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 TROVE2P10155 538 aaKnown RBP eCLIP13.05□□□□□ -0.32
RNF4-222ENST00000541204 IL1R2P27930 398 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 RPL22P35268 128 aaKnown RBP13.05□□□□□ -0.32
RNF4-222ENST00000541204 NRLP54845 237 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 BLMHQ13867 455 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 BBS9Q3SYG4 887 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 PALM2Q8IXS6 379 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 ARFGAP1Q8N6T3 406 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 DCAKDQ8WVC6 231 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 RSAD2Q8WXG1 361 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 TMEM176AQ96HP8 235 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 ACAP3Q96P50 834 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 BCO2Q9BYV7 579 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 KATNBL1Q9H079 304 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 ACSS3Q9H6R3 686 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 CDHR5Q9HBB8 845 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 SSU72Q9NP77 194 aaKnown RBP13.05□□□□□ -0.32
RNF4-222ENST00000541204 MED7O43513 233 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 TMEM63AO94886 807 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 NPTXRO95502 500 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 GTF2A2P52657 109 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms