RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 CYTH1Q15438 398 aa10.4□□□□□ -0.74
TRAF1-202ENST00000540010 MROH9Q5TGP6 573 aa10.4□□□□□ -0.74
TRAF1-202ENST00000540010 CATSPER4Q7RTX7 472 aa10.4□□□□□ -0.74
TRAF1-202ENST00000540010 ZNF677Q86XU0 584 aa10.4□□□□□ -0.74
TRAF1-202ENST00000540010 CCDC117Q8IWD4 279 aaPredicted RBP10.4□□□□□ -0.74
TRAF1-202ENST00000540010 FAM71DQ8N9W8 422 aa10.4□□□□□ -0.74
TRAF1-202ENST00000540010 KRT35Q92764 455 aa10.4□□□□□ -0.74
TRAF1-202ENST00000540010 SDCCAG3Q96C92 435 aa10.4□□□□□ -0.74
TRAF1-202ENST00000540010 RPS6KC1Q96S38 1066 aa10.4□□□□□ -0.74
TRAF1-202ENST00000540010 NIF3L1Q9GZT8 377 aa10.4□□□□□ -0.74
TRAF1-202ENST00000540010 METTL5Q9NRN9 209 aaKnown RBP10.4□□□□□ -0.74
TRAF1-202ENST00000540010 SETD4Q9NVD3 440 aa10.4□□□□□ -0.74
TRAF1-202ENST00000540010 COG5Q9UP83 839 aa10.4□□□□□ -0.74
TRAF1-202ENST00000540010 GNGT2O14610 69 aa10.4□□□□□ -0.74
TRAF1-202ENST00000540010 VNN1O95497 513 aa10.4□□□□□ -0.74
TRAF1-202ENST00000540010 C22orf31O95567 290 aa10.4□□□□□ -0.74
TRAF1-202ENST00000540010 MYL3P08590 195 aa10.4□□□□□ -0.74
TRAF1-202ENST00000540010 ZCCHC18P0CG32 403 aa10.4□□□□□ -0.74
TRAF1-202ENST00000540010 RANBP1P43487 201 aa10.4□□□□□ -0.74
TRAF1-202ENST00000540010 FNTAP49354 379 aa10.4□□□□□ -0.74
TRAF1-202ENST00000540010 ZNF200P98182 395 aaPredicted RBP10.4□□□□□ -0.74
TRAF1-202ENST00000540010 ENPEPQ07075 957 aa10.4□□□□□ -0.74
TRAF1-202ENST00000540010 SYDE1Q6ZW31 735 aaPredicted RBP10.4□□□□□ -0.74
TRAF1-202ENST00000540010 NLRP9Q7RTR0 991 aa10.4□□□□□ -0.74
TRAF1-202ENST00000540010 NDUFAF2Q8N183 169 aa10.4□□□□□ -0.74
TRAF1-202ENST00000540010 TRPV6Q9H1D0 765 aa10.4□□□□□ -0.74
TRAF1-202ENST00000540010 GDF3Q9NR23 364 aa10.4□□□□□ -0.74
TRAF1-202ENST00000540010 DDX56Q9NY93 547 aaKnown RBP10.4□□□□□ -0.74
TRAF1-202ENST00000540010 THEGQ9P2T0 379 aa10.4□□□□□ -0.74
TRAF1-202ENST00000540010 MORF4L1Q9UBU8 362 aa10.4□□□□□ -0.74
TRAF1-202ENST00000540010 UMODL1Q5DID0 1318 aa10.4□□□□□ -0.75
TRAF1-202ENST00000540010 PARP14Q460N5 1801 aa10.4□□□□□ -0.75
TRAF1-202ENST00000540010 RNF103-CHMP3A0A140T963 221 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 MCL1Q07820 350 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 STX3Q13277 289 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 RCN1Q15293 331 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 TRIP10Q15642 601 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 KIZQ2M2Z5 673 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 TAF1BQ53T94 588 aaPredicted RBP10.39□□□□□ -0.75
TRAF1-202ENST00000540010 FSCBQ5H9T9 825 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 KDELC2Q7Z4H8 507 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 ICA1LQ8NDH6 482 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 SKA2Q8WVK7 121 aaPredicted RBP10.39□□□□□ -0.75
TRAF1-202ENST00000540010 UPF3AQ9H1J1 476 aaKnown RBP10.39□□□□□ -0.75
TRAF1-202ENST00000540010 CDT1Q9H211 546 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 MANSC1Q9H8J5 431 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 NMRK2Q9NPI5 230 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 NAALADL1Q9UQQ1 740 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 IL18RAPO95256 599 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 SNAI1O95863 264 aaPredicted RBP10.39□□□□□ -0.75
TRAF1-202ENST00000540010 CST3P01034 146 aaPredicted RBP10.39□□□□□ -0.75
TRAF1-202ENST00000540010 STAG3L1P0CL83 205 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 SMPD1P17405 629 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 ADORA2BP29275 332 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 SKOR1P84550 965 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 MED21Q13503 144 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 KIF19Q2TAC6 998 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 DUSP28Q4G0W2 176 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 CDCA2Q69YH5 1023 aaPredicted RBP10.39□□□□□ -0.75
TRAF1-202ENST00000540010 IQSEC1Q6DN90 963 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 CCDC33Q8N5R6 958 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 SYT11Q9BT88 431 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 MINDY3Q9H8M7 445 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 APOBEC3GQ9HC16 384 aaKnown RBP10.39□□□□□ -0.75
TRAF1-202ENST00000540010 BFARQ9NZS9 450 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 ATP8B3O60423 1300 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 SLC15A5A6NIM6 579 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 ZBTB42B2RXF5 422 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 CES2O00748 559 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 TNPO2O14787 897 aaKnown RBP10.39□□□□□ -0.75
TRAF1-202ENST00000540010 TRAPPC3O43617 180 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 ATP6V1G2O95670 118 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 SHBGP04278 402 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 TCN1P20061 433 aaPredicted RBP10.39□□□□□ -0.75
TRAF1-202ENST00000540010 NME3Q13232 169 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 TSHZ1Q6ZSZ6 1077 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.39□□□□□ -0.75
TRAF1-202ENST00000540010 HACE1Q8IYU2 909 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 C1orf131Q8NDD1 294 aaKnown RBP10.39□□□□□ -0.75
TRAF1-202ENST00000540010 FEZF2Q8TBJ5 459 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 HES6Q96HZ4 224 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 TMEM237Q96Q45 408 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 TMEM121Q9BTD3 319 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 BAG5Q9UL15 447 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 SRGAP2BP0DMP2 458 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 BRD2P25440 801 aaKnown RBP10.39□□□□□ -0.75
TRAF1-202ENST00000540010 MBTD1Q05BQ5 628 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 ORC1Q13415 861 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 C11orf63Q6NUN7 778 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 SLFN11Q7Z7L1 901 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 MTDHQ86UE4 582 aaKnown RBP10.39□□□□□ -0.75
TRAF1-202ENST00000540010 PRCCQ92733 491 aaPredicted RBP10.39□□□□□ -0.75
TRAF1-202ENST00000540010 CPSF3Q9UKF6 684 aaKnown RBP10.39□□□□□ -0.75
TRAF1-202ENST00000540010 TNFSF13BQ9Y275 285 aa10.39□□□□□ -0.75
TRAF1-202ENST00000540010 IGKV6-21A0A0C4DH24 114 aa10.38□□□□□ -0.75
TRAF1-202ENST00000540010 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.38□□□□□ -0.75
TRAF1-202ENST00000540010 TRIM49D1C9J1S8 452 aa10.38□□□□□ -0.75
TRAF1-202ENST00000540010 RARAP10276 462 aa10.38□□□□□ -0.75
TRAF1-202ENST00000540010 ENO3P13929 434 aaPredicted RBP10.38□□□□□ -0.75
TRAF1-202ENST00000540010 SOX11P35716 441 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms