RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 RNF148Q8N7C7 305 aa3.88□□□□□ -1.79
MCF2-210ENST00000536274 KIAA0895Q8NCT3 520 aa3.88□□□□□ -1.79
MCF2-210ENST00000536274 ZSWIM2Q8NEG5 633 aa3.88□□□□□ -1.79
MCF2-210ENST00000536274 FAM172AQ8WUF8 416 aa3.88□□□□□ -1.79
MCF2-210ENST00000536274 SNX19Q92543 992 aa3.88□□□□□ -1.79
MCF2-210ENST00000536274 MAML1Q92585 1016 aa3.88□□□□□ -1.79
MCF2-210ENST00000536274 ZNF75CPQ92670 426 aaPredicted RBP3.88□□□□□ -1.79
MCF2-210ENST00000536274 RPGRQ92834 1020 aaKnown RBP3.88□□□□□ -1.79
MCF2-210ENST00000536274 ERGIC2Q96RQ1 377 aa3.88□□□□□ -1.79
MCF2-210ENST00000536274 CGREF1Q99674 301 aa3.88□□□□□ -1.79
MCF2-210ENST00000536274 HAUS8Q9BT25 410 aa3.88□□□□□ -1.79
MCF2-210ENST00000536274 BBS2Q9BXC9 721 aa3.88□□□□□ -1.79
MCF2-210ENST00000536274 MIR1-1HGQ9H1L0 117 aa3.88□□□□□ -1.79
MCF2-210ENST00000536274 TMEM60Q9H2L4 133 aa3.88□□□□□ -1.79
MCF2-210ENST00000536274 CAAP1Q9H8G2 361 aa3.88□□□□□ -1.79
MCF2-210ENST00000536274 CLK4Q9HAZ1 481 aaKnown RBP3.88□□□□□ -1.79
MCF2-210ENST00000536274 TRIM39Q9HCM9 518 aa3.88□□□□□ -1.79
MCF2-210ENST00000536274 GID8Q9NWU2 228 aa3.88□□□□□ -1.79
MCF2-210ENST00000536274 GIN1Q9NXP7 522 aa3.88□□□□□ -1.79
MCF2-210ENST00000536274 AIPL1Q9NZN9 384 aa3.88□□□□□ -1.79
MCF2-210ENST00000536274 SLC27A5Q9Y2P5 690 aa3.88□□□□□ -1.79
MCF2-210ENST00000536274 STARD13Q9Y3M8 1113 aa3.88□□□□□ -1.79
MCF2-210ENST00000536274 C1orf232A0A0U1RR37 186 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 CCDC195A0A1B0GUA6 201 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 GOLGA8JA6NMD2 632 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 TTC34A8MYJ7 566 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 TMEM114B3SHH9 223 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 PSMD12O00232 456 aaPredicted RBP3.87□□□□□ -1.79
MCF2-210ENST00000536274 PLOD2O00469 737 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 TRAFD1O14545 582 aaPredicted RBP3.87□□□□□ -1.79
MCF2-210ENST00000536274 TP73O15350 636 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 HDAC3O15379 428 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 USP12O75317 370 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 USP17L8P0C7I0 530 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 DLATP10515 647 aaKnown RBP3.87□□□□□ -1.79
MCF2-210ENST00000536274 RARBP10826 455 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 MYL2P10916 166 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 KRT15P19012 456 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 SLC9A1P19634 815 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 CXCR2P25025 360 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 RPA1P27694 616 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 BMPR1AP36894 532 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 HK2P52789 917 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 MLLT10P55197 1068 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 NPEPPSP55786 919 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 MAPK7Q13164 816 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 MAPK11Q15759 364 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 CCDC137Q6PK04 289 aaKnown RBP3.87□□□□□ -1.79
MCF2-210ENST00000536274 TPTE2Q6XPS3 522 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 KIF6Q6ZMV9 814 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 ARHGEF18Q6ZSZ5 1173 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 CHST15Q7LFX5 561 aaPredicted RBP3.87□□□□□ -1.79
MCF2-210ENST00000536274 HPS6Q86YV9 775 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 PRELID2Q8N945 189 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 HCAR2Q8TDS4 363 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 PXYLP1Q8TE99 480 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 TANKQ92844 425 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 ARHGEF26Q96DR7 871 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 DCUN1D1Q96GG9 259 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 TBATAQ96M53 351 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 CITED4Q96RK1 184 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 RANBP9Q96S59 729 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 RIOK1Q9BRS2 568 aaKnown RBP3.87□□□□□ -1.79
MCF2-210ENST00000536274 FGFBP2Q9BYJ0 223 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 NOL6Q9H6R4 1146 aaKnown RBP3.87□□□□□ -1.79
MCF2-210ENST00000536274 S100A14Q9HCY8 104 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 HMX1Q9NP08 348 aaPredicted RBP3.87□□□□□ -1.79
MCF2-210ENST00000536274 VPS45Q9NRW7 570 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 TBC1D23Q9NUY8 699 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 SEPT11Q9NVA2 429 aaKnown RBP3.87□□□□□ -1.79
MCF2-210ENST00000536274 DNAJC28Q9NX36 388 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 SLC17A7Q9P2U7 560 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 UVRAGQ9P2Y5 699 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 SRP68Q9UHB9 627 aaKnown RBP3.87□□□□□ -1.79
MCF2-210ENST00000536274 NUDT5Q9UKK9 219 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 ATP6V0A2Q9Y487 856 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 MAFBQ9Y5Q3 323 aaPredicted RBP3.87□□□□□ -1.79
MCF2-210ENST00000536274 AP4B1Q9Y6B7 739 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 A0A1W2PQJ5 194 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 FAM47DPA6NHR8 397 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 A8MUA0 341 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 NDC80O14777 642 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 TBCAO75347 108 aaKnown RBP3.87□□□□□ -1.79
MCF2-210ENST00000536274 ENTPD3O75355 529 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 PEX14O75381 377 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 SNRPA1P09661 255 aaKnown RBP3.87□□□□□ -1.79
MCF2-210ENST00000536274 POLR2MP0CAP2 368 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 PRKACAP17612 351 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 GRK2P25098 689 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 CHRNA5P30532 468 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 HNRNPH3P31942 346 aaKnown RBP3.87□□□□□ -1.79
MCF2-210ENST00000536274 GJC1P36383 396 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 FDFT1P37268 417 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 ACOT2P49753 483 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 BMXP51813 675 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 EIF3EP60228 445 aaKnown RBP3.87□□□□□ -1.79
MCF2-210ENST00000536274 PTENP60484 403 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 CLCQ05315 142 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 FPGSQ05932 587 aa3.87□□□□□ -1.79
MCF2-210ENST00000536274 VAC14Q08AM6 782 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms