RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 IL1R2P27930 398 aa3.36□□□□□ -1.87
CD44-238ENST00000534296 CTGFP29279 349 aa3.36□□□□□ -1.87
CD44-238ENST00000534296 GKP32189 559 aa3.36□□□□□ -1.87
CD44-238ENST00000534296 CARSP49589 748 aaKnown RBP3.36□□□□□ -1.87
CD44-238ENST00000534296 PLCD1P51178 756 aa3.36□□□□□ -1.87
CD44-238ENST00000534296 PGDP52209 483 aa3.36□□□□□ -1.87
CD44-238ENST00000534296 ITGA8P53708 1063 aa3.36□□□□□ -1.87
CD44-238ENST00000534296 CYP4F2P78329 520 aa3.36□□□□□ -1.87
CD44-238ENST00000534296 FMO1Q01740 532 aa3.36□□□□□ -1.87
CD44-238ENST00000534296 SP2Q02086 613 aa3.36□□□□□ -1.87
CD44-238ENST00000534296 FOXF2Q12947 444 aa3.36□□□□□ -1.87
CD44-238ENST00000534296 STK3Q13188 491 aa3.36□□□□□ -1.87
CD44-238ENST00000534296 HDAC1Q13547 482 aaPredicted RBP3.36□□□□□ -1.87
CD44-238ENST00000534296 C3orf38Q5JPI3 329 aa3.36□□□□□ -1.87
CD44-238ENST00000534296 COLEC12Q5KU26 742 aa3.36□□□□□ -1.87
CD44-238ENST00000534296 RNF44Q7L0R7 432 aa3.36□□□□□ -1.87
CD44-238ENST00000534296 DGKHQ86XP1 1220 aa3.36□□□□□ -1.87
CD44-238ENST00000534296 C16orf71Q8IYS4 520 aaPredicted RBP3.36□□□□□ -1.87
CD44-238ENST00000534296 GALNT4Q8N4A0 578 aa3.36□□□□□ -1.87
CD44-238ENST00000534296 SMG7Q92540 1137 aaKnown RBP3.36□□□□□ -1.87
CD44-238ENST00000534296 MAML1Q92585 1016 aa3.36□□□□□ -1.87
CD44-238ENST00000534296 IQCDQ96DY2 449 aa3.36□□□□□ -1.87
CD44-238ENST00000534296 MSLNLQ96KJ4 702 aa3.36□□□□□ -1.87
CD44-238ENST00000534296 HS6ST2Q96MM7 605 aa3.36□□□□□ -1.87
CD44-238ENST00000534296 TRIM5Q9C035 493 aa3.36□□□□□ -1.87
CD44-238ENST00000534296 UNKQ9C0B0 810 aaKnown RBP3.36□□□□□ -1.87
CD44-238ENST00000534296 STK32BQ9NY57 414 aa3.36□□□□□ -1.87
CD44-238ENST00000534296 NKX1-2Q9UD57 310 aaPredicted RBP3.36□□□□□ -1.87
CD44-238ENST00000534296 RGS17Q9UGC6 210 aaPredicted RBP3.36□□□□□ -1.87
CD44-238ENST00000534296 SERGEFQ9UGK8 458 aa3.36□□□□□ -1.87
CD44-238ENST00000534296 DDX20Q9UHI6 824 aaKnown RBP3.36□□□□□ -1.87
CD44-238ENST00000534296 AOX1Q06278 1338 aa3.36□□□□□ -1.87
CD44-238ENST00000534296 COL11A2P13942 1736 aaPredicted RBP3.36□□□□□ -1.87
CD44-238ENST00000534296 RHPN2P1A8MT19 583 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 ZNF213O14771 459 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 PMPCBO75439 489 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 TUBB4AP04350 444 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 ANXA2P07355 339 aaKnown RBP3.35□□□□□ -1.87
CD44-238ENST00000534296 CELA2AP08217 269 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 IDEP14735 1019 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 KELP23276 732 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 EPHB2P29323 1055 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 UQCRC1P31930 480 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 GATMP50440 423 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 OS9Q13438 667 aaPredicted RBP3.35□□□□□ -1.87
CD44-238ENST00000534296 BRD3Q15059 726 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 LY6KQ17RY6 165 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 PROSER3Q2NL68 480 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 ZNF750Q32MQ0 723 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 MIS18BP1Q6P0N0 1132 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 VSTM1Q6UX27 236 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 ZDHHC24Q6UX98 284 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 PTCHD4Q6ZW05 846 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 C14orf80Q86SX3 495 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 CCDC146Q8IYE0 955 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 VGLL2Q8N8G2 317 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 REPS1Q96D71 796 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 SNX22Q96L94 193 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 CCDC17Q96LX7 622 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 PRR25Q96S07 402 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 MMS19Q96T76 1030 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 BRIP1Q9BX63 1249 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 BHMT2Q9H2M3 363 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 DNMT3BQ9UBC3 853 aaKnown RBP3.35□□□□□ -1.87
CD44-238ENST00000534296 DNAJB11Q9UBS4 358 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 STEAP1Q9UHE8 339 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 MID2Q9UJV3 735 aa3.35□□□□□ -1.87
CD44-238ENST00000534296 A6NNZ2 444 aa3.34□□□□□ -1.87
CD44-238ENST00000534296 PRRT4C9JH25 899 aa3.34□□□□□ -1.87
CD44-238ENST00000534296 PPP6CO00743 305 aa3.34□□□□□ -1.87
CD44-238ENST00000534296 PQBP1O60828 265 aaKnown RBP3.34□□□□□ -1.87
CD44-238ENST00000534296 IL18RAPO95256 599 aa3.34□□□□□ -1.87
CD44-238ENST00000534296 PDE8BO95263 885 aa3.34□□□□□ -1.87
CD44-238ENST00000534296 VNN1O95497 513 aa3.34□□□□□ -1.87
CD44-238ENST00000534296 FGAP02671 866 aa3.34□□□□□ -1.87
CD44-238ENST00000534296 MYL1P05976 194 aa3.34□□□□□ -1.87
CD44-238ENST00000534296 PARP1P09874 1014 aaKnown RBP3.34□□□□□ -1.87
CD44-238ENST00000534296 CYP2D6P10635 497 aa3.34□□□□□ -1.87
CD44-238ENST00000534296 CREB1P16220 341 aa3.34□□□□□ -1.87
CD44-238ENST00000534296 RBL1P28749 1068 aa3.34□□□□□ -1.87
CD44-238ENST00000534296 RENBPP51606 427 aa3.34□□□□□ -1.87
CD44-238ENST00000534296 TIRAPP58753 221 aa3.34□□□□□ -1.87
CD44-238ENST00000534296 TXNL4AP83876 142 aaKnown RBP3.34□□□□□ -1.87
CD44-238ENST00000534296 TIAL1Q01085 375 aaKnown RBP eCLIP3.34□□□□□ -1.87
CD44-238ENST00000534296 IFIT5Q13325 482 aaKnown RBP3.34□□□□□ -1.87
CD44-238ENST00000534296 SEMA5AQ13591 1074 aa3.34□□□□□ -1.87
CD44-238ENST00000534296 ZNF268Q14587 947 aaPredicted RBP3.34□□□□□ -1.87
CD44-238ENST00000534296 CYP1B1Q16678 543 aa3.34□□□□□ -1.87
CD44-238ENST00000534296 FAM187BQ17R55 369 aa3.34□□□□□ -1.87
CD44-238ENST00000534296 PTCHD3Q3KNS1 767 aa3.34□□□□□ -1.87
CD44-238ENST00000534296 CCSAPQ6IQ19 270 aaPredicted RBP3.34□□□□□ -1.87
CD44-238ENST00000534296 TMEM65Q6PI78 240 aa3.34□□□□□ -1.87
CD44-238ENST00000534296 KSR2Q6VAB6 950 aa3.34□□□□□ -1.87
CD44-238ENST00000534296 ZNF782Q6ZMW2 699 aaPredicted RBP3.34□□□□□ -1.87
CD44-238ENST00000534296 DPY19L3Q6ZPD9 716 aa3.34□□□□□ -1.87
CD44-238ENST00000534296 UNC13DQ70J99 1090 aa3.34□□□□□ -1.87
CD44-238ENST00000534296 NEK8Q86SG6 692 aa3.34□□□□□ -1.87
CD44-238ENST00000534296 SESTD1Q86VW0 696 aa3.34□□□□□ -1.87
CD44-238ENST00000534296 SKAP1Q86WV1 359 aa3.34□□□□□ -1.87
CD44-238ENST00000534296 COL23A1Q86Y22 540 aaPredicted RBP3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms