RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 FAM81BQ96LP2 452 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 BPIFA3Q9BQP9 254 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 BRD9Q9H8M2 597 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 TRPC7Q9HCX4 862 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 HEBP1Q9NRV9 189 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 OSER1Q9NX31 292 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 GMIPQ9P107 970 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 AJAP1Q9UKB5 411 aaPredicted RBP13.7□□□□□ -0.22
VPS28-216ENST00000533806 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.7□□□□□ -0.22
VPS28-216ENST00000533806 ZNF318Q5VUA4 2279 aa13.7□□□□□ -0.22
VPS28-216ENST00000533806 DENND4CQ5VZ89 1909 aa13.69□□□□□ -0.22
VPS28-216ENST00000533806 TULP2O00295 520 aa13.69□□□□□ -0.22
VPS28-216ENST00000533806 XPO1O14980 1071 aaKnown RBP13.69□□□□□ -0.22
VPS28-216ENST00000533806 COCHO43405 550 aa13.69□□□□□ -0.22
VPS28-216ENST00000533806 CALCAP01258 141 aa13.69□□□□□ -0.22
VPS28-216ENST00000533806 CKMP06732 381 aa13.69□□□□□ -0.22
VPS28-216ENST00000533806 GLULP15104 373 aa13.69□□□□□ -0.22
VPS28-216ENST00000533806 CD19P15391 556 aa13.69□□□□□ -0.22
VPS28-216ENST00000533806 AOC1P19801 751 aa13.69□□□□□ -0.22
VPS28-216ENST00000533806 PDE6CP51160 858 aa13.69□□□□□ -0.22
VPS28-216ENST00000533806 PLCB2Q00722 1185 aa13.69□□□□□ -0.22
VPS28-216ENST00000533806 PDE4CQ08493 712 aa13.69□□□□□ -0.22
VPS28-216ENST00000533806 IFRD2Q12894 506 aaPredicted RBP13.69□□□□□ -0.22
VPS28-216ENST00000533806 MLF2Q15773 248 aaPredicted RBP13.69□□□□□ -0.22
VPS28-216ENST00000533806 PM20D1Q6GTS8 502 aa13.69□□□□□ -0.22
VPS28-216ENST00000533806 BHLHA9Q7RTU4 235 aa13.69□□□□□ -0.22
VPS28-216ENST00000533806 SCD5Q86SK9 330 aa13.69□□□□□ -0.22
VPS28-216ENST00000533806 TMEM105Q8N8V8 129 aa13.69□□□□□ -0.22
VPS28-216ENST00000533806 SLC35F5Q8WV83 523 aa13.69□□□□□ -0.22
VPS28-216ENST00000533806 ZFYVE19Q96K21 471 aa13.69□□□□□ -0.22
VPS28-216ENST00000533806 NAA15Q9BXJ9 866 aaKnown RBP13.69□□□□□ -0.22
VPS28-216ENST00000533806 TBC1D17Q9HA65 648 aa13.69□□□□□ -0.22
VPS28-216ENST00000533806 NMUR1Q9HB89 426 aa13.69□□□□□ -0.22
VPS28-216ENST00000533806 CYLDQ9NQC7 956 aa13.69□□□□□ -0.22
VPS28-216ENST00000533806 GKN1Q9NS71 199 aa13.69□□□□□ -0.22
VPS28-216ENST00000533806 DLGAP2Q9P1A6 1054 aa13.69□□□□□ -0.22
VPS28-216ENST00000533806 LIMA1Q9UHB6 759 aaKnown RBP13.69□□□□□ -0.22
VPS28-216ENST00000533806 COL4A2P08572 1712 aa13.69□□□□□ -0.22
VPS28-216ENST00000533806 OBSL1O75147 1896 aa13.69□□□□□ -0.22
VPS28-216ENST00000533806 NUP210Q8TEM1 1887 aaPredicted RBP13.68□□□□□ -0.22
VPS28-216ENST00000533806 OTOL1A6NHN0 477 aaPredicted RBP13.68□□□□□ -0.22
VPS28-216ENST00000533806 CYP26A1O43174 497 aa13.68□□□□□ -0.22
VPS28-216ENST00000533806 LETM1O95202 739 aaPredicted RBP13.68□□□□□ -0.22
VPS28-216ENST00000533806 SETSIPP0DME0 302 aa13.68□□□□□ -0.22
VPS28-216ENST00000533806 BRD2P25440 801 aaKnown RBP13.68□□□□□ -0.22
VPS28-216ENST00000533806 PLA2G4AP47712 749 aa13.68□□□□□ -0.22
VPS28-216ENST00000533806 RPL34P49207 117 aaKnown RBP13.68□□□□□ -0.22
VPS28-216ENST00000533806 BCAT1P54687 386 aa13.68□□□□□ -0.22
VPS28-216ENST00000533806 BST2Q10589 180 aaKnown RBP13.68□□□□□ -0.22
VPS28-216ENST00000533806 FZD5Q13467 585 aa13.68□□□□□ -0.22
VPS28-216ENST00000533806 STILQ15468 1287 aa13.68□□□□□ -0.22
VPS28-216ENST00000533806 MEA1Q16626 185 aa13.68□□□□□ -0.22
VPS28-216ENST00000533806 ANO6Q4KMQ2 910 aa13.68□□□□□ -0.22
VPS28-216ENST00000533806 HECTD3Q5T447 861 aa13.68□□□□□ -0.22
VPS28-216ENST00000533806 KLHDC7AQ5VTJ3 777 aa13.68□□□□□ -0.22
VPS28-216ENST00000533806 SCML4Q8N228 414 aa13.68□□□□□ -0.22
VPS28-216ENST00000533806 UBA3Q8TBC4 463 aa13.68□□□□□ -0.22
VPS28-216ENST00000533806 SH3RF2Q8TEC5 729 aa13.68□□□□□ -0.22
VPS28-216ENST00000533806 KCTD13Q8WZ19 329 aa13.68□□□□□ -0.22
VPS28-216ENST00000533806 CHFRQ96EP1 664 aa13.68□□□□□ -0.22
VPS28-216ENST00000533806 SHDQ96IW2 340 aa13.68□□□□□ -0.22
VPS28-216ENST00000533806 CCSER2Q9H7U1 834 aa13.68□□□□□ -0.22
VPS28-216ENST00000533806 HPS4Q9NQG7 708 aa13.68□□□□□ -0.22
VPS28-216ENST00000533806 THG1LQ9NWX6 298 aaKnown RBP13.68□□□□□ -0.22
VPS28-216ENST00000533806 TAB2Q9NYJ8 693 aa13.68□□□□□ -0.22
VPS28-216ENST00000533806 MTF2Q9Y483 593 aaPredicted RBP13.68□□□□□ -0.22
VPS28-216ENST00000533806 COL4A3Q01955 1670 aa13.68□□□□□ -0.22
VPS28-216ENST00000533806 MUC6Q6W4X9 2439 aa13.68□□□□□ -0.22
VPS28-216ENST00000533806 ANAPC1Q9H1A4 1944 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 KANSL1LA0AUZ9 987 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 LEFTY2O00292 366 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 FOXN3O00409 490 aaPredicted RBP13.67□□□□□ -0.22
VPS28-216ENST00000533806 GREM1O60565 184 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 COL9A1P20849 921 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 PTMSP20962 102 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 GPD2P43304 727 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 TNK2Q07912 1038 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 MTF1Q14872 753 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 PMF1Q6P1K2 205 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 KLHDC10Q6PID8 442 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 TPRG1Q6ZUI0 275 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 SUGP1Q8IWZ8 645 aaKnown RBP13.67□□□□□ -0.22
VPS28-216ENST00000533806 DHX40Q8IX18 779 aaKnown RBP13.67□□□□□ -0.22
VPS28-216ENST00000533806 YAF2Q8IY57 180 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 FAM71AQ8IYT1 594 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 FLCNQ8NFG4 579 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 PJA1Q8NG27 643 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 OSBPL6Q9BZF3 934 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 VPS16Q9H269 839 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 MFSD1Q9H3U5 465 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 ACP6Q9NPH0 428 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 PLCB1Q9NQ66 1216 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 TLR8Q9NR97 1041 aaKnown RBP13.67□□□□□ -0.22
VPS28-216ENST00000533806 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.67□□□□□ -0.221e-6■■□□□ 14.1
VPS28-216ENST00000533806 GTSE1Q9NYZ3 720 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 CLIC5Q9NZA1 410 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 HESX1Q9UBX0 185 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 DNAJC12Q9UKB3 198 aa13.67□□□□□ -0.22
VPS28-216ENST00000533806 ARIH1Q9Y4X5 557 aaPredicted RBP13.67□□□□□ -0.22
VPS28-216ENST00000533806 CPQQ9Y646 472 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms