RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 TNFRSF10BO14763 440 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 SCAMP3O14828 347 aaKnown RBP12.05□□□□□ -0.48
VPS28-214ENST00000531032 COCHO43405 550 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 KAT7O95251 611 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 VNN1O95497 513 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 ADH1CP00326 375 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 C4BPAP04003 597 aaKnown RBP12.05□□□□□ -0.48
VPS28-214ENST00000531032 SLFN14P0C7P3 912 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 MBL2P11226 248 aaPredicted RBP12.05□□□□□ -0.48
VPS28-214ENST00000531032 ADH5P11766 374 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 TUBP50607 506 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 SLC5A3P53794 718 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 CDH8P55286 799 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 CREB5Q02930 508 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 MESP2Q0VG99 397 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 IFRD2Q12894 506 aaPredicted RBP12.05□□□□□ -0.48
VPS28-214ENST00000531032 BIRC3Q13489 604 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 NCOA4Q13772 614 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 FOXD4L6Q3SYB3 417 aaPredicted RBP12.05□□□□□ -0.48
VPS28-214ENST00000531032 HSF5Q4G112 596 aaPredicted RBP12.05□□□□□ -0.48
VPS28-214ENST00000531032 USP39Q53GS9 565 aaKnown RBP12.05□□□□□ -0.48
VPS28-214ENST00000531032 ZNF667Q5HYK9 610 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 TCEAL6Q6IPX3 200 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 ANO7Q6IWH7 933 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 FOXD4L3Q6VB84 417 aaPredicted RBP12.05□□□□□ -0.48
VPS28-214ENST00000531032 C12orf40Q86WS4 652 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 SFTPA1Q8IWL2 248 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 GRAMD1CQ8IYS0 662 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 CCDC33Q8N5R6 958 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 KIAA0895Q8NCT3 520 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 MDGA1Q8NFP4 955 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 SCAMP5Q8TAC9 235 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 TCEAL3Q969E4 200 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 OTUB2Q96DC9 234 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 SMARCD1Q96GM5 515 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 TNIP3Q96KP6 325 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 PNKPQ96T60 521 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 DUSP9Q99956 384 aaKnown RBP12.05□□□□□ -0.48
VPS28-214ENST00000531032 LSM14BQ9BX40 385 aaKnown RBP12.05□□□□□ -0.48
VPS28-214ENST00000531032 TPSD1Q9BZJ3 242 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 DMAP1Q9NPF5 467 aaPredicted RBP12.05□□□□□ -0.48
VPS28-214ENST00000531032 TBC1D14Q9P2M4 693 aa12.05□□□□□ -0.48
VPS28-214ENST00000531032 MAP1BP46821 2468 aaKnown RBP12.04□□□□□ -0.48
VPS28-214ENST00000531032 MYOFQ9NZM1 2061 aa12.04□□□□□ -0.48
VPS28-214ENST00000531032 ABCA7Q8IZY2 2146 aa12.04□□□□□ -0.48
VPS28-214ENST00000531032 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.04□□□□□ -0.48
VPS28-214ENST00000531032 ACTN4O43707 911 aaKnown RBP12.04□□□□□ -0.48
VPS28-214ENST00000531032 CAVIN2O95810 425 aa12.04□□□□□ -0.48
VPS28-214ENST00000531032 APODP05090 189 aa12.04□□□□□ -0.48
VPS28-214ENST00000531032 ZDHHC11BP0C7U3 371 aa12.04□□□□□ -0.48
VPS28-214ENST00000531032 HNRNPLP14866 589 aaKnown RBP eCLIP12.04□□□□□ -0.48
VPS28-214ENST00000531032 PMLP29590 882 aa12.04□□□□□ -0.48
VPS28-214ENST00000531032 GBP1P32455 592 aa12.04□□□□□ -0.48
VPS28-214ENST00000531032 KIR2DL1P43626 348 aaPredicted RBP12.04□□□□□ -0.48
VPS28-214ENST00000531032 SLC6A11P48066 632 aa12.04□□□□□ -0.48
VPS28-214ENST00000531032 STK4Q13043 487 aa12.04□□□□□ -0.48
VPS28-214ENST00000531032 ZACNQ401N2 412 aa12.04□□□□□ -0.48
VPS28-214ENST00000531032 HECTD3Q5T447 861 aa12.04□□□□□ -0.48
VPS28-214ENST00000531032 RNF43Q68DV7 783 aa12.04□□□□□ -0.48
VPS28-214ENST00000531032 TMEM92Q6UXU6 159 aa12.04□□□□□ -0.48
VPS28-214ENST00000531032 SCARA5Q6ZMJ2 495 aa12.04□□□□□ -0.48
VPS28-214ENST00000531032 CEP57L1Q8IYX8 460 aa12.04□□□□□ -0.48
VPS28-214ENST00000531032 FUKQ8N0W3 1084 aa12.04□□□□□ -0.48
VPS28-214ENST00000531032 PHTF2Q8N3S3 785 aa12.04□□□□□ -0.48
VPS28-214ENST00000531032 IL17RCQ8NAC3 791 aa12.04□□□□□ -0.48
VPS28-214ENST00000531032 OLIG1Q8TAK6 271 aa12.04□□□□□ -0.48
VPS28-214ENST00000531032 EDEM2Q9BV94 578 aa12.04□□□□□ -0.48
VPS28-214ENST00000531032 SDCBP2Q9H190 292 aa12.04□□□□□ -0.48
VPS28-214ENST00000531032 KCTD10Q9H3F6 313 aa12.04□□□□□ -0.48
VPS28-214ENST00000531032 COMMD8Q9NX08 183 aa12.04□□□□□ -0.48
VPS28-214ENST00000531032 CFAP45Q9UL16 551 aa12.04□□□□□ -0.48
VPS28-214ENST00000531032 THADAQ6YHU6 1953 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 LNP1A1A4G5 178 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.03□□□□□ -0.48
VPS28-214ENST00000531032 SGK1O00141 431 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 HOXC11O43248 304 aaPredicted RBP12.03□□□□□ -0.48
VPS28-214ENST00000531032 ALDH1A2O94788 518 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 KLF8O95600 359 aaPredicted RBP12.03□□□□□ -0.48
VPS28-214ENST00000531032 BCKDHBP21953 392 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 KCNA4P22459 653 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 GRIA2P42262 883 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 DLG4P78352 724 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 SHC2P98077 582 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 DNM1Q05193 864 aaKnown RBP12.03□□□□□ -0.48
VPS28-214ENST00000531032 PKP1Q13835 747 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 LY6G5CQ5SRR4 150 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 N4BP2L1Q5TBK1 243 aaPredicted RBP12.03□□□□□ -0.48
VPS28-214ENST00000531032 ACOT1Q86TX2 421 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 ETFBKMTQ8IXQ9 262 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 CRYBG2Q8N1P7 616 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 ALLCQ8N6M5 410 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 TXNDC5Q8NBS9 432 aaKnown RBP12.03□□□□□ -0.48
VPS28-214ENST00000531032 ZMIZ2Q8NF64 920 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 ELMO3Q96BJ8 720 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 PAGE5Q96GU1 130 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 MED10Q9BTT4 135 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 CCSER2Q9H7U1 834 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 CSNK1G1Q9HCP0 422 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 ARHGEF4Q9NR80 690 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 KRT82Q9NSB4 513 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms